- Research article
- Open Access
Binding affinity of five PBPs to Ostrinia sex pheromones
BMC Molecular Biology volume 18, Article number: 4 (2017)
Pheromone binding proteins (PBPs) of male Lepidoptera function in chemical communication, mate attraction and recognition. Directional selection was previously predicted between PBP3 orthologs of Ostrinia furnacalis and Ostrinia nubilalis were interpreted as being involved in sexual isolation.
In vitro assays show that recombinant male OfurPBP3 bound O. furnacalis sex pheromones, Z-12-tetradecenyl acetate (Z12-14:OAc) and E-12-tetradecenyl acetate (E12-14:OAc), as well as to ECB pheromones Z11- and E11-14:OAc. Recombinant OfurPBP4 and OfurPBP5 bound E11- and Z11-14:OAc with greater affinity compared to Z12- and E12-14:OAc, and OfurPBP4 incapable of binding with E12-14:OAc. In silico molecular docking predicted OfurPBP3 residues Phe12, Ile52, Leu94, Ile113 within a hydrophobic ligand-binding pocket and may participate in E12- and Z12-14:OAc binding. Independent site-directed mutagenesis experiments demonstrated that Ser12, Asn52, Arg94, and Asn113 residues variants caused an approximately 1.7- to 4.6-fold reduction in OfurPBP3 affinity for Z12- and E12-14:OAc, and a 2.7- to 8.4-fold decrease in affinity towards E11- and Z11-14:OAc.
Five PBPs of O. furnacalis play important functions in Ostrinia pheromones binding. These four amino acids may play a role in binding of sex pheromone, but this study does not address questions regarding specific response between males of O. furnacalis and O. nubilalis. Additional studies are required determine the role, if any, PBPs play in the evolution of sex pheromone communication.
The sex pheromone detection by male moths (insect Order Lepidoptera) is highly sensitive and capable of detecting volatile hydrocarbons at low concentrations, as well as discriminating among stereoisomers and pheromone blends . Female moths produce and emit volatile sex pheromones from pheromone glands located in distal segments of the abdomen, and perception can cause conspecific males to be attracted from a distance of 100 m . The specificity of male reception and response to female sex pheromones is mediated by olfactory response neurons (ORNs) located in antennal trichoid sensilla. Detection of female pheromones can induce physiological or behavioral changes in males following downstream signal transduction events mediated by the ORN . The first step of pheromone detection is the transport of the hydrophobic pheromone across the hydrophobic lymph of the trichoid sensillum. Pheromone binding proteins (PBPs) are a subgroup of the odorant binding protein (OBP) family that have been reported in many species of Lepidoptera , and are hypothesized to be essential in environmental detection of sex pheromones by male moths . PBPs are small, water-soluble, extracellular proteins that are found in the lymph surrounding the dendrites of pheromone-sensitive ORNs . PBPs bind short to medium chain length fatty acid derivatives that enter the sensillum lymph through cuticular pores, and function as chaperones that transport pheromones to the sex pheromone receptors localized on the dendritic membranes of ORNs. PBPs have six highly conserved cysteine residues that help stabilize the globular protein and the internal hydrophobic binding pocket .
Nerve impulses are generated by ORNs following the delivery of sex pheromones by the PBPs are mediated by transmembrane odorant receptors (ORs) located on the surface of neuron dendrite. Insect ORs dimerize with a highly conserved co-receptor termed the odorant receptor co-receptor (Orco) to form a ligand-gated ion channel . Pheromones are released from carrier PBPs when lower pH microenvironments are encountered at the neuron surface, where selectivity of PBPs may be enhanced . Pheromone ligand release by PBPs and subsequent binding to the ORco + ORx complex will cause an electrical impulse to be generated . Changes in the structure or function of these sexual communication pathway components form a hypothetical basis for the evolution of novel mechanisms of male attraction, and may be involved in establishment of sexual isolation between recently diverged species.
Species from the genus Ostrinia are models for the study of male sex pheromone detection systems. Different sex pheromone components are produced in the pheromone gland of females in the genus Ostrinia [10,11,12,13], but different ratios of E-11- and Z-11-tetradecenyl acetate (E11- and Z11-14:OAc) predominate among most species. One exception is found with females of the Asian corn borer (ACB), O. furnacalis (Guenée), that produce and emit pheromone components that are synthesized with the double bond at the twelfth carbonyl carbon ; E-12- and Z-12-tetradecenyl acetate (E12- and Z12-14:OAc). Mating between O. furnacalis and the closely related European corn borer (ECB), O. nubilalis (Hübner), occurs in the laboratory, but behavioral isolation and differences in response to sex pheromone may likely prevent high degrees of hybridization under natural conditions. The gene coding sequence of five PBPs were sequenced for both O. furnacalis and O. nubilalis, and with the exception of PBP3, the amino acid sequences between orthologs are highly conserved . A significant overrepresentation of non-synonymous mutations predicted between PBP3 orthologs suggested a potential role in pheromone binding specificity between E11- and Z11-14:OAc, and E12- and Z12-14:OAc . In this study, we expressed and compared binding affinities of the five O. furnacalis PBP paralogs for synthetic female O. furnacalis and O. nubilalis pheromones, and mutagenized four amino acid residues predicted to coordinate E12- and Z12-14:OAc pheromones within the hydrophobic binding pocket. The data presented in this study are important for understanding the functional residues that are involved in effecter binding by Ostrinia PBP3, but does not attempt to address the evolutionary changes that impart divergent function between O. furacalis compared to O. nubilalis PBPs. Regardless, the data presented here are important for understanding the residues involved in general sex pheromone binding, but additional research is required to investigate any residues involved in the selectivity of OfurPBP3 compared to OnPBP3.
RNA extraction and cDNA synthesis
A laboratory colony of O. furnacalis was maintained at the Institute of Plant Protection, Chinese Academy of Agricultural Sciences. Pupae were allowed to emerge in a netted cage at room temperature, and moths were fed a 10% honey solution. Antennae were dissected from three day old male moths, immediately frozen in liquid nitrogen and stored at −80 °C prior to use. Total RNA was extracted from O. furnacalis antennae using Trizol™ reagent (Invitrogen, USA) according to manufacturer instructions. RNA was then reverse transcribed into 1st strand cDNAs in a reaction primed with an oligodT18 oligonucleotide, and synthesized with Avian Myeloblastosis Virus (AMV) reverse transcriptase (Promega, USA) at 40 °C for 1 h. The reaction was stopped by incubation at 95 °C for 5 min and then cooling on ice for 20 min.
The cDNA sequences for five Asian corn borer PBP genes were previously reported by Allen and Wanner [15, NCBI accession number range GU828024 to GU828028], and were used to design primer pairs that amplified the in frame mature gene coding sequence for each gene (omitting the signal peptide). Each primer incorporated a novel 5-prime overhang with palindromic sites for cleavage by BamHI (forward primer) or HindIII (reverse primer), which allowed for subsequent directional cloning into the restriction endonuclease sites of the multicloning site in the pET30a(+) expression vector (Novagen, Darmstadt, Germany). Briefly, PCR primers for the amplification of mature OfurPBP1-OfurPBP5 coding sequences were designed using Primer3  with a minimum length of 19 nucleotides and a predicted melting temperature (Tm) of ≥58 °C. The 5-prime extensions that encompassed the BamHI preceding the N-terminal CDS and HindIII site following the C-terminal coding region were inserted manually, the details of the primers was shown in Additional file 1: S1. The subsequent PCR reactions used 5 pmol of each primer used 1.0 μl of cDNA template diluted 1:10 with the high fidelity polymerase (Takara, Japan). Thermal cycling was performed on a Biometra T-Gradient thermocycler (Biometra, Göttingen, Germany) under the following conditions: 94 °C for 2 min 30 s, 35 cycles of 94 °C for 30 s, 58 °C for 30 s, and 72 °C for 1 min, and 72 °C for 10 min. An aliquot of each PCR product was separated on a 1.5% agarose gel containing 0.5 μg ml−1 ethidium bromides and visualized under UV illumination. PCR products were cloned into the pGEM-T vector (Promega, Madison, WI), and single clones were obtained after selection on LB agar plates containing 50 μg ml−1 ampicillin. For each OfurPBP clone, plasmid DNA isolated and sequenced from the T7 primer binding site at Beijing SinoGenoMax Co., Ltd (Beijing, China) on an ABI 3730XL DNA Analyzer (Applied Biosystems, Foster City, CA, USA). Electropherogram data were compared to cDNA sequences of respective PBPs in GenBank accessions GU828024 to GU828028 previously published by  using Vector NTI software (Life Technologies, Grand Island, NY). Independent multiple sequence alignments were made using OfurPBP1 to OfurPBP5 sequences generated in this study, O. furnacalis (GU828024.1 to GU828028.1), O. nubilalis E-strain (GU828019.1 to GU828023.1), and O. nubilalis Z-strain (GU826166.1 to GU826170.1) using the Clustal W algorithm (gap opening penalty 15, gap extension penalty 6.66, weight matrix IUB, and transition weight of 0.5).
Prokaryotic expression and purification
The pGEM plasmid inserts were excised using BamHI and HindIII double digestion, excised from a 1% agarose gel and fragments purified using Nucleic Acid Purification Kit (Axygen, USA). The BamHI and HindIII digestion products for OfurPBP1 to OfurPBP5 were then ligated individually into BamHI and HindIII cut and dephosphorylated pET30a(+) vector by incubation with T4 Ligase (Promega) for 4 h at 16 °C. Recombinant pET30a(+) vectors containing inserts derived from the five pheromone binding proteins (OfurPBP1-OfurPBP5) were used to transform BL21(DE3) Escherichia coli cells by electroporation, and cells allowed to recover in SOC medium for 1 h at 37 °C. Transformed cells were selected by spread plating on LB agar plates containing 25 μg ml−1 kanamycin sulfates as described by the manufacturer. Positive clones were cultured, and plasmid DNA isolated and inserts sequenced using the T7 primer as described above.
Positive pET30a(+) clones containing correct insert DNA from each of the PBP sequences were incubated separately in fresh liquid LB medium containing 25 μg ml−1 kanamycin sulfate. Cultures were shaken at 37 °C until the optical density (OD) of each culture reached to 0.6–0.8, where OD was measured on a Shimadzu spectrophotometer (Shimadzu, Japan). Protein expression was induced in each culture by the addition of isopropyl-β-d-1-thiogalactopyranoside (IPTG) to a final concentration of 0.1 mM, followed by incubation on a 150 rpm shaker at 37 °C for 6 h. The cells were harvested by centrifugation at 7500×g for 15 min at 4 °C, chilled on ice, and treated with ultrasonic disruptor. After centrifugation, all five proteins were highly present in inclusion bodies. The protein pellets were suspended using previously published methods . Proteins were purified by application of the lysate to Ni–NTA columns and purified as specified by the manufacturer (Qiagen, Germany), followed by digestion of eluted proteins with enterokinase to remove the His tag. Protein preparations were desalted by dialysis, quantified by means of the Bradford method , and purity verified by SDS-PAGE.
Initial measures of the binding affinity of the fluorescent ligand N-phenyl-1-naphthylamine (1-NPN) to recombinant OfurPBP1, OfurPBP2, OfurPBP3, OfurPBP4 and OfurPBP5 was determined by titrating to final concentrations of 1.0–12.0 µM 1-NPN with 2 µM of each protein in 1.0 ml 50 mM Tris–HCl, pH 7.4 and pH 4.0. The 1-NPN probe was excited at 337 nm, and emission spectra were recorded between 380 and 450 nm on a Shimadzu fluorescence spectrophotometer (Shimadzu, Japan). Each trial was run in triplicate, and Scatchard plots of the ratio of bound to unbound ligand were created using Microsoft Excel 2010. Competitive binding assays were performed with each of the OfurPBPs using 1-NPN as the probe. Assay reactions were comprised of 2 µM of each OfurPBP diluted individually in 2.0 ml 20 mM Tris–HCl, pH 7.4, which were then titrated with 1.0 mM increments sex pheromone diluted in methanol to a final concentrations of 1–6 µM. The synthetic standards that correspond to the sex pheromones of O. furnacalis, O. nubilalis and other lepidopteran species were purchased from Sigma-Aldrich (Shanghai, China; Additional file 2: S2). Excitation and emission spectra were recorded from triplicate assays as described above. The binding affinity of each purified OfurPBP to the different sex pheromones was measured by calculation of binding constants via competitive fluorescence-binding assay. In brief, relative fluorescent intensities were analyzed by GraphPad Prism 5 software (GraphPad Software Inc, La Jolla, CA) and calculation was done using the equation: Ki = [IC50]/(1 + [1-NPN]/K1-NPN), where [1-NPN] is the free concentration of 1-NPN and K1-NPN is the dissociation constant of the complex protein/1-NPN [19, 20]. Sex pheromone binding affinity with different PBPs was analyzed using One-way ANOVA in SAS 8.0 (SAS Institute Inc., Cary, NC, USA).
Molecular modeling and ligand docking
The amino acids of OfurPBP3 were submitted to SWISS-MODEL tool to automate homology-modeling . The sequence of OfurPBP3 was compared to all the known protein sequences and that had a high similarity with the target sequence on RCSB Protein Data Bank (PDB) (www.rcsb.org). The OfurPBP3 used AtraPBP1 for a homology model . The main pheromone components of O. furnacalis, Z12- and E12-14:OAc were used respectively in molecular docking with the simulated model of OfurPBP3 based on the advanced docking program CDOCKER . Molecular dynamics scheme based on CHARMm was used to dock ligands into a binding site in the CDOCKER program. Total interaction (E total), Van der Waals (E vdw), and electrostatic interaction energies (E ele) were calculated for all OfurPBP3 residues predicted to be involved in the binding of intraspecific sex pheromone components.
Four amino acids of OfurPBP3 with some of the most negative estimated E total values were mutated using Quick-change lightning site-directed mutagenesis kit (Stratagene, La Jolla, CA, USA); Ile to Asn at position 113 (I113A), m2 Phe to Ser at position 12 (F12S), m3 Ile to Asn at position 52 (I52N), and m4 Leu to Arg at position 94 (I94R). The sequence of each primers used to alter the aforementioned sites by nucleotide mismatch are shown in Additional file 3: S3. After initial denaturation at 94 °C for 5 min, the subsequent PCR followed with 30 cycles of 94 °C for 30 s, 56 °C for 30 s, and final extension at 72 °C for 1 min. Changes within site-directed mutant fragments were verified by cloning into the pGEM-T Easy vector (Promega) by Sanger sequencing. All mutated OfurPBPs proteins were expressed and used within in vitro binding assays as described above.
RNA extraction and cDNA synthesis
Five amplified fragments predicted to contain the mature OfurPBP1 to OfurPBP5 gene coding sequences were successfully amplified by RT-PCR (approximate 450 bp in size; gel data not shown), cloned into the pGEM vector, and Sanger sequenced. Multiple nucleotide sequence alignments of these cloned OfurPBP sequences showed 100% similarity with homologous regions of GenBank accessions for O. furnacalis PBP1 to PBP5 previously identified by Allen and Wanner . One exception was predicted in a single nucleotide polymorphism at position 474 of OfurPBP2 which changed a guanine (G) in GU828025.1 to an adenosine (A) in our cloned OfurPBP2 sequence. This SNP on OfurPBP2 produced a synonymous mutation, such that the amino acid sequence was unchanged and the same as that reported by Allen and Wanner .
Prokaryotic expression and purification
Five mature OfurPBP gene coding sequences were successfully excised from pGEM, and re-inserted into to the pET30a(+) expression vector. End sequencing of inserts from the T7 primer binding site flanking the pET30a(+) vector multicloning site confirmed the correct orientation and sequence of each OfurPBP insert (data not shown). Each of the IPTG induced cultures derived from E. coli pET30a(+)-OfurPBP transformants showed high expression of a His-tagged fusion protein in the approximately 16–19 kDa size range (Fig. 1, lane 4), and subsequent purification of each on Ni–NTA columns successfully removed visible endogenous E. coli proteins (Fig. 1, lane 5). Digestion of purified OfurPBPs fusion proteins with enterokinase (to remove the His-tags) resulted in decreased estimated molecular weights, which were less than the 15–17 kDa predicted for full-length lepidopteran PBPs containing leader peptides (Fig. 1, lane 6). This was expected since the cloned fragments were devoid of leader peptides and represent fully functional processed peptides. After analysis, most of the proteins were expressed in inclusion bodies. Bradford assays estimated the concentration of each purified OfurPBP protein at ~1 to 2 μg ml−1, and extracts were used for the further experiments in this study.
The general affinity of the 1-NPN reporter for each OfurPBP was measured (Fig. 2a), and a regression of these titrated values were plotted within Scatchard plots and showed a linear relationship. Next, the binding specificity of 6 different Ostrinia pheromone components were tested against each recombinant OfurPBP in competitive binding assays with 1-NPN as the reporter (Additional file 2: S2). The female sex pheromones, Z12- and E12-14:OAc are produced by O. furnacalis and Z11- and E11-14:OAc by O. nubilalis (see “Background” section). Competitive binding assay results showed that Z12- and E12-14:OAc bound most strongly with OfurPBP3 (Ki ≤ 2.86 ± 0.04), and also showed affinity for OfurPBP1 and OfurPBP2 (Ki = 5.01 ± 0.14; Table 1; Fig. 2). Results also showed that Z12-14:OAc bound OfurPBP5 weakly and E12-14:OAc had no detectable binding to OfurPBP4. In contrast, both Z11- and E11-14:OAc pheromones from O. nubilalis showed relatively high affinities for all five OfurPBPs (Table 1; Fig. 2), with estimates of Z11-14:OAc binding to OfurPBP4 being the highest for all those that were tested (Ki = 1.09 ± 0.05). Additionally, the O. nubilalis pheromone E11-14:OAc bound strongly to OfurPBP5 (Ki = 1.14 ± 0.04), and showed a significantly greater affinity compared to either Z12- and E12-14:OAc from O. furnacalis (Ki = 6.80 ± 0.47). All five recombinant OfurPBPs showed weak or lack of detectable binding to the interspecific lepidopteran sex pheromones, Z9-14:OH and E11-14:OH. However, under the pH 4.0, none of the OfurPBPs showed any binding to the sex pheromones that were tested (data not shown).
3D modeling and docking
The OfurPBP3 was successfully modeling with AtraPBP1 by using of SWISS-MODEL tool (Fig. 3a). This figure visual displayed the 3-dimensional structure of OfurPBP3. The QMEAN and GMQE were used to quality estimation, all the score reflected the expected accuracy of OfurPBP3 built with the alignment and template of AtraPBP1. Based on the consideration of hydrophobicity at their binding site, ligand poses and consensus score programs were executed to evaluate binding pose affinities for the residues. Subsequently, optimal 3D binding conformations to the main sex pheromone components, Z12- and E12-14:OAc, were shown in Fig. 3c, d. The interaction energies E total, E vdw, and E ele between OfurPBP3 amino acids that interact with Z12- or E12-14:OAc were estimated (Table 2). Results indicated that Phe12 and Leu94 interacted most strongly with Z12-14:OAc. and Phe12 and Ile52 with E12-14:OAc.
Based on the molecular modeling and docking results four amino acid residues with among the highest E total were chosen (Phe 12, Ile52, Leu94 and Ile113), and in vitro mutagenesis altered OfurPBP3 mutants F12S, I52N, I94R, and I113N verified from Sanger sequencing results (Additional file 4: S4). Subsequent competitive binding assays demonstrated that all OfurPBP3 mutants showed reduced affinities towards Z11- and E11-14:OAc (8.53–20.11 μM) and Z12- and E12-14:OAc (4.89–18.77 μM; Table 3) compared to the wild-type OfurPBP3. Among the mutants, I113N and F12S had the least dramatic effect on affinity towards Z12-14:OAc (~2-fold reduction). Surprisingly I113N showed a nearly 8.25-fold reduction in Z11-14:OAc binding compared to the wildtype, and represented the greatest degree of change among all the assays. All mutated OfurPBPs showed the capacity to bind the sex pheromones components of other lepidopteran females, Z9-14:OH and E11-14:OH (Table 3), compared to the wildtype which failed to demonstrate this function. In particular, I113N demonstrated the ability to bind Z9:14-OH, which is a known antagonist of male response to E11- and Z11-14:OAc as well as E12- and Z12-14:OAc (see “Discussion” section).
We showed that the five recombinant OfurPBPs have a range of binding affinities with synthetic O. furnacalis sex pheromones, and that OfurPBP2 and OfurPBP3 bind Z12- and E12-14:OAc with the greatest affinity (Table 1; Fig. 2). These binding results might suggest that female O. furnacalis pheromones are bound strongly to male-antennal expressed OfurPBP2 and OfurPBP3 in vivo, and that these two chaperones could play a role in the specific transport of Z12- and E12-14:OAc within the sensillar lymph . The highly biased expression of OfurPBP2 and OfurPBP3 transcripts in the Ostrinia male compared to female antennae has been used to suggest possible roles in the binding of female sex pheromones , and the latter hypothesis was corroborated for the first time by our data (Table 1). The correlation between PBP expression level and molecular function was further corroborated by OfurPBP4 and OfurPBP5, wherein both show female biased expression (e.g. low expression in male antennae; Allen and Wanner ) and have weak or undetectable binding affinities towards E12- and Z12-14:OAc (Table 1). A difference in pheromone binding affinity has been previously shown for PBP1 from A. polyphemus and A. pernyi which were both bound strongly by E4,9Z-14:Ac, but PBP2 and PBP3 from these species preferentially bound E6,11Z-16:Ald and E4,9Z-14:Ac, respectively . Analogously, PBP1 and PBP2 from Lymantria dispar male antennae respectively bind specifically to (+) and (−) enantiomers of the pheromone released by conspecific females , which suggest that PBP gene family members can develop variant molecular functions and that our observed differences between OfurPBP2 and OfurPBP3 compared to OfurPBP4 and OfurPBP5 may not be surprising. Furthermore, the binding affinities of OfurPBP1, OfurPBP2, and OfurPBP3 to cognate pheromone components estimated in this study are comparable to analogous Ki values estimated for Helicoverpa armigera PBPs (Ki values 1.2–5.2 μM) and H. assulta (0.7–4.1 μM) to their corresponding sex pheromone . Similarly, the binding affinities of the cockroach Leucophaea maderae PBP, PBPLma, to their sex pheromones 3-hydroxy-butan-2-on or butane-2,3-diol were 3.8 and 2.5 μM, respectively .
In contrast to predictions made by Allan and Wanner (2010), OfurPBP3 did not show specific affinity towards Z12- and E12-14:OAc, but instead demonstrated a nearly equal affinity for Z11- and E11-14:OAc emitted by O. nubilalis females. Moreover, all OfurPBPs showed a comparatively strong affinity towards Z11- and E11-14:OAc, including observation of strong binding by OfurPBP4 and OfurPBP5. These ligand affinities are in direct opposition to species responses , which might suggest that OfurPBPs bind to Z11- and E11-14:OAc does not preclude a role in male sexual response, but only in potential for binding these components within the sensillar lymph. Transcripts encoding PBPs have previously been found in non-pheromone sensitive female antennae and male sensilla [29, 30], which suggests that PBPs may have evolved alternate roles such as host plant recognition . This notion was reinforced by evidence that compounds structurally similar to cognate pheromones can be bound by Bombyx mori PBP1 , and further by observations that of sex pheromones and plant volatiles can interact within the same peripheral sensory pathways [33, 34]. This altogether suggests that binding compounds or interspecific pheromone components to a PBP does not preclude subsequent interaction with the ORco + ORx complex resulting in sexual response. Grosse-Wilde et al.  showed that pheromone agonists bound to different PBP paralogs and lead to different responses by male sexually-responding ORco − ORx receptors, such that members of the PBP gene family may have evolved specific interactions at different ORco − ORx complexes. The O. furnacalis OR3 (OfOR3) was shown to specifically respond to Z12-14:OAc and E12-14:OAc . The selectivity of PBP for delivery of these pheromone components to OfOR3 was not investigated in this or any other previous studies, but may provide crucial information regarding the evolution of species-specific male sexual response. Regardless, our results are the first to demonstrate that male antennal expressed OfurPBP2 and 3 are capable of binding the intraspecific female pheromone components Z12-14:OAc and E21-14:OAc.
A change in the 3-dimensional conformation of PBPs occurs following a shift from neutral to acidic pH environments, and is associated with binding and release of cognate pheromone ligands. Crystal structures of pheromone-bound PBPs indicated that the C-terminal amino acid sequence remains linear under neutral pH , whereas this C-terminal region forms an alpha-helix in acidic conditions [alpha helix 7, α7; 37, 38]. The more linear conformation with 6 alpha helices was used to predict the 3D structure of OfurPBP3 (Fig. 3b), wherein 18 residues within the hydrophobic binding pocket were predicted to interact with Z12-14:OAc and E21-14:OAc (Table 2). This pH-dependent change is also accompanied by alteration of PBP 3-dimensional structure where salt bridges are formed between two Asp residues on the C-terminal α7 helix and two corresponding deprotonated His residues in the pheromone binding pocket at low pH. Thus, the pH-dependent alpha-helix interactions with the pheromone binding pocket competes with sex pheromone ligands, and is a key component for PBP pheromone carrier and delivery functions. Specifically, neutral pH in sensillar lymph may place PBPs into a competent pheromone-binding state, where these chaperones are capable of transporting hydrophobic pheromone hydrocarbons.
Residues of OfurPBP3 potentially involved during the binding of intraspecific pheromones at neutral pH binding are important for understanding function within a species, and the E Total derived from CDOCKER predicted the 18 key amino acids which may interact with Z12- and E12-14:OAc ligands (Table 2). Predictions from homology-based in silico structural modeling can be unreliable  and translation into biological systems can be bolstered by experimental validation. Thus, site-directed mutagenizes of four residues with the highest E total values were made in four separate mutant OfurPBPs. Comparisons between wildtype and mutant OfurPBPs clearly demonstrated the negative affects on binding affinities following change of native residues to those with different polar properties and suggest that Phe12, Ile52, Ile94, and Ile113 are important for the efficient binding of cognate sex pheromones. Interestingly, after mutation, the OfurPBPs showed weak binding affinity towards other lepidopteran female sex pheromone, Z9-14:OH and E11-14:OH, that was not observed with the wild type OfurPBP3. These differences may occur either through direct interaction with the bound hydrocarbons, or by stabilization of the hydrophobic binding pocket. The affects of induced amino acid changes on the overall 3D structure and function of a protein remain largely unknown . This suggests that even single amino acid changes might alter PBP conformation in unforeseen ways, such that further research, such as using x-ray or NMR to analyze the structure of native and mutant binding proteins are likely required. Although our current study demonstrated the ability of OfurPBPs to bind inter and intraspecific sex pheromones, further research is likely required to fully understand the structural, chemical, and environmental factors that may influence any specific interactions between PBPs and their cognate sex pheromones.
Our research provides crucial functional information regarding the specificity of PBPs in an Ostrinia moth species, which is a group that has emerged as a model for the study of sexual communication systems in Lepidoptera. This study provides the first biochemical evidence that OfurPBP2 and OfurPBP3 bind Z12- and E12-14:OAc with high affinity. Moreover, this current work demonstrates that despite prior evidence for directional selection and predicted divergent function between OnPBP3 and OfurPBP3, the latter shows a nearly equal affinity to O. furnacalis female Z12- and E12-14:OAc and O. nubilalis Z11- and E11-14:OAc. The four amino acids, Ser12, Asn52, Arg94, and Asn113 may play a role in binding of sex pheromone of PBP3, but cannot be interpreted in the context of species-specific binding since we only mutagenized sites predicted to be important in protein interactions with pheromone ligands. Our results suggest that overall individual O. furnacalis PBPs may be capable of equivalent binding of both intra- and inter-specific female sex pheromone components in vitro, and therefore could suggest that molecular discrimination in male response might reside within the behavioral pathway. Additional research is undoubtedly required to both dissect the molecular functions of PBPs in concert with cognate ORs with respect to ligand binding as well as the mechanisms that transmit neuronal signals which result in differential male responses to female emitted pheromones.
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TTZ, KLH and ZYW designed and conducted the research experiments. TTZ, KWW and BSC interpreted the results and drafted the manuscript. TTZ and YQS are the principal investigator who designed the experiment, analyzed the data and critically reviewed the manuscript. All authors read and approved the final manuscript.
The authors declare that they have no competing interests.
Availability of data and materials
All data generated or analyzed during this study are included in this published article [and its Additional files].
This work was supported by the National Natural Science Foundation of China (31201753) and Special Fund for Agro-scientific Research in the Public Interest (201303026). A portion of research data analyses and interpretation was supported by the United States Department of Agriculture, 565 Agricultural 566 Research Service (USDA-ARS; CRIS Project 3625-22000-017-00) and the Iowa Agriculture 567 and Home Economics Experiment Station, Ames, IA (Project 3543).
Tiantao Zhang and Yaqi Sun contributed equally to this work
The primers used for the PBPs expression. The lists of primers used for PBPs expression, and the digestion sites were underlined.
The message of sex pheromones used in binding assay. The sex pheromones messages used in binding experiment, including the molecular weight, purity and company.
The primers used for site-directed mutants. The lists of primers used for site-directed mutants, and the digestion sites were underlined.
The sequences of the wild type OfurPBP3 and the mutants. The nucleotide sequences of wild type OfurPBP3 and the mutants (OfurPBP3-m1, OfurPBP3-m2, OfurPBP3-m3 and OfurPBP3-m4).
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Zhang, T., Sun, Y., Wanner, K.W. et al. Binding affinity of five PBPs to Ostrinia sex pheromones. BMC Molecular Biol 18, 4 (2017). https://doi.org/10.1186/s12867-017-0079-y
- Pheromone binding protein
- Sex pheromone