Skip to main content

Advertisement

Table 1 Summary statistics from Illumina sequencing of Thrips tabaci transcriptome

From: RNA sequencing, selection of reference genes and demonstration of feeding RNAi in Thrips tabaci (Lind.) (Thysanoptera: Thripidae)

Parameters Statistics (totals)
No. of reads 16,737,058
Number of bases 4,937,528,906
Total data in Gb 4.9 Gb
No. of transcripts 36,342
Total transcript length (bases) 66,005,010
N50 3543
Maximum transcript length 16,083
Minimum transcript length 200
Mean transcript length 1816
No. of CDS 27,836
Total CDS length (bases) 34,426,740
Maximum CDS length 13,161
Minimum CDS length 297
Mean CDS length 1236
200 ≤ transcript < 500 11,320
500 ≤ transcript < 1000 6922
1000 ≤ transcript < 2000 6664
2000 ≤ transcript < 3000 3893
3000 ≤ transcript < 4000 2658
4000 ≤ transcript < 5000 1884
transcript ≥ 5000 3001
200 ≤ CDS < 500 6801
500 ≤ CDS < 1000 8534
1000 ≤ CDS < 2000 8129
2000 ≤ CDS < 3000 2562
3000 ≤ CDS < 4000 1016
4000 ≤ CDS < 5000 395
CDS ≥ 5000 399