Table 1 Summary statistics from Illumina sequencing of Thrips tabaci transcriptome
Parameters | Statistics (totals) |
|---|---|
No. of reads | 16,737,058 |
Number of bases | 4,937,528,906 |
Total data in Gb | 4.9Â Gb |
No. of transcripts | 36,342 |
Total transcript length (bases) | 66,005,010 |
N50 | 3543 |
Maximum transcript length | 16,083 |
Minimum transcript length | 200 |
Mean transcript length | 1816 |
No. of CDS | 27,836 |
Total CDS length (bases) | 34,426,740 |
Maximum CDS length | 13,161 |
Minimum CDS length | 297 |
Mean CDS length | 1236 |
200 ≤ transcript < 500 | 11,320 |
500 ≤ transcript < 1000 | 6922 |
1000 ≤ transcript < 2000 | 6664 |
2000 ≤ transcript < 3000 | 3893 |
3000 ≤ transcript < 4000 | 2658 |
4000 ≤ transcript < 5000 | 1884 |
transcript ≥ 5000 | 3001 |
200 ≤ CDS < 500 | 6801 |
500 ≤ CDS < 1000 | 8534 |
1000 ≤ CDS < 2000 | 8129 |
2000 ≤ CDS < 3000 | 2562 |
3000 ≤ CDS < 4000 | 1016 |
4000 ≤ CDS < 5000 | 395 |
CDS ≥ 5000 | 399 |