Table 4 The most abundant novel candidate miRNAs identified from HIST and NC libraries
miRNA name | Sequence | Length | Count | Precursor location | MFEa | MFEIb | |
|---|---|---|---|---|---|---|---|
HIST | NC | ||||||
rno-miR-n048_5p | CAGTGGTTTTACCCTATGGTAG | 22 | 2605 | 2040 | 19:37422715:37422794:+ | − 48.2 | 1.24 |
rno-miR-n026_5p | AATGTGACTCAGCTATCTGAAC | 22 | 710 | 457 | 8:55466028:55466104:− | − 44.3 | 1.23 |
rno-miR-n031_3p | TCAGTAGGCCAGACAGCAAGC | 21 | 588 | 453 | 11:36339323:36339403:− | − 39.6 | 0.86 |
rno-miR-n044_5p | TGTGTTTTGTGTGTGTACATGT | 22 | 231 | 170 | 17:79266887:79266980:− | − 49.0 | 1.26 |
|  |  |  |  |  | 17:79268511:79268591:− | − 33.8 | 1.06 |
|  |  |  |  |  | 17:79270548:79270628:− | − 38.0 | 1.19 |
|  |  |  |  |  | 17:79273909:79273989:− | − 38.0 | 1.15 |
|  |  |  |  |  | 17:79275714:79275805:− | − 40.3 | 1.12 |
|  |  |  |  |  | 17:79276506:79276586:+ | − 38.0 | 1.15 |
|  |  |  |  |  | 17:79281787:79281880:− | − 49.0 | 1.26 |
|  |  |  |  |  | 17:79283453:79283546:− | -47.1 | 1.24 |
|  |  |  |  |  | 17:79285357:79285437:− | − 33.8 | 1.06 |
|  |  |  |  |  | 17:79277748:79277828:− | − 33.7 | 1.05 |
|  |  |  |  |  | 17:79264421:79264501:− | − 38.0 | 1.19 |
rno-miR-n025_3p | ATGGTAATGGTGGTGGTGATGG | 22 | 213 | 108 | 8:64686682:64686763:+ | − 46.0 | 1.44 |
rno-miR-n002_3p | CATAAGTGTAGAGAGTCTGTAGT | 23 | 122 | 59 | 1:131079839:131079925:+ | − 31.3 | 0.95 |
rno-miR-n021_5p | TGGTTTACCGTCCCACATACA | 21 | 77 | 57 | 6:134389818:134389888:+ | − 43.5 | 1.45 |
rno-miR-n022_3p | AAGGGCAAGCTCTCTTCGAGG | 21 | 46 | 36 | 6:134405230:134405322:+ | − 42.7 | 1.07 |
rno-miR-n014_5p | TACAGTTAGACGTAGAGACCAT | 22 | 49 | 31 | 3:153140628:153140705:− | − 35.0 | 1.21 |
rno-miR-n001_3p | CTCTAGCCAGGGCTTGACTGC | 21 | 48 | 24 | 1:116347377:116347469:− | − 53.3 | 0.95 |
|  |  |  |  |  | 1:116214989:116215081:+ | − 54.6 | 0.99 |