Skip to main content

Table 6 List of all candidate motifs found for both RBPs, Tc UBP1 and Tc RBP3.

From: Functionally related transcripts have common RNA motifs for specific RNA-binding proteins in trypanosomes

Ā 

% of mRNAs

Ā 

RNA motifs

EXP

dbEST

Ī”

UBP1m

70.27

9.74

61

UBP1-m2

56.76

20.26

36

UBP1-m3

51.35

15.52

36

UBP1-m4

35.14

1.22

34

UBP1-m5

37.84

5.32

33

UBP1-m6

43.24

12.06

31

UBP1-m7

43.24

17.39

26

UBP1-m8

51.35

25.66

26

UBP1-m9

43.24

17.78

25

UBP1-m10

37.84

14.96

23

UBP1-m11

32.43

10.17

22

UBP1-m12

24.32

3.39

21

UBP1-m13

27.03

6.60

20

UBP1-m14

27.03

8.18

19

UBP1-m15

27.03

8.52

19

UBP1-m16

8.11

0.31

8

RBP3m

70.59

2.23

68

RBP3-m2

70.59

8.69

62

RBP3-m3

88.24

29.09

59

RBP3-m4

82.35

26.02

56

RBP3-m5

58.82

6.83

52

RBP3-m6

47.06

5.76

41

RBP3-m7

41.18

2.81

38

RBP3-m8

41.18

4.05

37

RBP3-m9

35.29

2.61

33

RBP3-m10

29.41

0.13

29

RBP3-m11

29.41

1.20

28

RBP3-m12

23.53

0.07

23

RBP3-m13

17.65

0.04

18

RBP3-m14

17.65

0.48

17

  1. Percentage of transcripts bearing the motif in the experimental dataset and trypanosome EST database are shown. Ī”, indicates the difference between both percentages.
Back to article page

BMC Molecular Biology

ISSN: 1471-2199

Contact us