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Table 3 Number of hits (%) and frequency (hits/kb) of motifs in the experimental dataset and RefSeq database.

From: Functionally related transcripts have common RNA motifs for specific RNA-binding proteins in trypanosomes

Motif

Parameter

Motif in dataset

Score Exp./RefSeq

  

Exp. dataset

RefSeq

 

UBP1m

%

70.27

9.48

-

 

Frequency

1.75

0.11

16.52

RBP3m

%

70.59

5.21

-

 

Frequency

1.09

0.06

19.39

  1. RefSeq database is composed of trypanosome full length mRNAs and experimental dataset represent the 3' UTR of transcripts. The Score value represents the relationship between both frequencies.
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BMC Molecular Biology

ISSN: 1471-2199

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