Skip to main content

Table 2 Experimental Tc RBP3-associated RNAs.

From: Functionally related transcripts have common RNA motifs for specific RNA-binding proteins in trypanosomes

Description

Transcript Name

Systematic name or GenBank Acc. Num.

mRNAs

Ā Ā 

Ubiquitin/Ribosomal protein S27a

RPS27

Tc00.1047053510409.39

Polypyrimidine-tract binding protein

PTB

Tc00.1047053511727.160

Ribosomal protein S2

RPS2

Tc00.1047053506213.60

Ribosomal protein P2

RPP2

Tc00.1047053510267.20

Ribosomal protein L5

RPL18

Tc00.1047053509671.80

Ribosomal protein S5

RPS5

Tc00.1047053506297.150

Ribosomal protein L22

RPL22

Tc00.1047053509747.20

Ribosomal protein L9*

RPL6

Tc00.1047053509695.170

Ribosomal protein L14*

RPL14

Tc00.1047053506861.30

Ribosomal protein S6*

RPS6

Tc00.1047053506241.170

Ribosomal protein L2*

RPL2

Tc00.1047053511181.100

Ribosomal protein S12*

RPS12

Tc00.1047053508231.20

Ribosomal protein L27a (L29)*

RPL27

Tc00.1047053508461.510

RNA helicase

HELI

Tc00.1047053511139.40

RHS family

RHS

Tc00.1047053508325.60

Sterol 24 C-methyltransferase

CMT

Tc00.1047053505683.10

Imidazolonepropionase

IPROP

Tc00.1047053508741.140

Flagellum-adhesion glycoprotein

FAP

Tc00.1047053503571.10

Simil S-adenosylmethionine decarboxylase

SAM

Tc00.1047053504257.30

Calpain-like cysteine peptidase

CALP

Tc00.1047053509001.40

Hypothetical protein 1

HYPO1

Tc00.1047053506811.120

Hypothetical protein 11

HYPO11

Tc00.1047053506949.30

Hypothetical protein 12

HYPO12

Tc00.1047053503999.80

Expressed sequence tag (EST)

Ā Ā 

TENU 0711*

EST7

AI026499

Ribosomal RNA

Ā Ā 

28S ribosomal RNA*

28S rRNA

L22334

Mitochondrial transcripts

Ā Ā 

ATPase subunit 6*

ATPase 6

U43567

NADH dehydrogenase subunit 8 (TEUF0103)*

ND8

DQ343645

NADH dehydrogenase subunit 8 (TEUF0239)*

ND8

DQ343645

  1. List of transcripts found in association with immunoprecipitated Tc RBP3. Excluding rRNAs and mitochondrial transcripts, the total number of clones analyzed was 25, including 24 sequences matching to CDSs and 1 to EST. RPS2 was isolated twice and the remaining sequences sequenced once. *, not included in the dataset used for motif search.