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Table 2 Motif count of GANNNNGA in the 1000 bp upstream sequences of orthologous miRNAs of C. elegans and C. briggsae

From: Identification of phylogenetically conserved sequence motifs in microRNA 5' flanking sites from C. elegans and C. briggsae

Index miRNA CEL gene relationship CEL CBR Index miRNA CEL gene relationship CEL CBR
1 mir-228 intergenic 52 29 36 mir-268 Intergenic 10 23
2 mir-47 Intergenic 27 29 37 mir-70 Intronic + 9 9
3 mir-233 Intronic + 26 16 38 mir-253 Intronic + 9 10
4 mir-124 Intronic + 26 30 39 mir-353 Intronic + 9 10
5 mir-239.2 Intergenic 24 13 40 mir-359 Intergenic 9 10
6 mir-241 Intergenic 23 10 41 mir-42 Intergenic 9 19
7 mir-52 Intergenic 23 25 42 mir-254 Intronic + 8 6
8 mir-1 Intergenic 23 26 43 mir-240 Intergenic 8 7
9 mir-239.1 Intergenic 22 13 44 mir-45 Intergenic 8 10
10 mir-87 Intronic + 18 15 45 mir-57 Intergenic 8 18
11 mir-62 exon overlap 18 21 46 mir-79 Intergenic 8 34
12 mir-71 Intronic + 18 34 47 mir-360 Intergenic 7 8
13 mir-58 Intronic + 17 16 48 mir-235 Intergenic 7 9
14 mir-82 Intronic + 17 22 49 mir-248 Intergenic 7 10
15 lin-4 Intergenic 17 23 50 mir-232 Intergenic 7 11
16 mir-86 Intronic - 17 24 51 mir-34 Intergenic 7 12
17 mir-49 Intergenic 16 10 52 mir-242 Intergenic 7 14
18 mir-85 intronic + 16 13 53 mir-81 Intronic - 7 14
19 mir-354 3' UTR + 16 14 54 mir-245 Intergenic 7 15
20 mir-90 Intergenic 16 27 55 mir-231 Intergenic 6 10
21 mir-77 Intergenic 15 8 56 mir-60 Intergenic 6 12
22 mir-35 intronic - 15 11 57 mir-51 Intergenic 6 18
23 mir-244 Intergenic 15 16 58 mir-83 Intergenic 6 18
24 mir-84 Intergenic 14 18 59 mir-61 Intergenic 6 21
25 mir-251 Intergenic 13 9 60 mir-392 Intergenic 5 5
26 mir-80 Intergenic 13 15 61 mir-234 Intergenic 5 9
27 mir-73 Intergenic 13 16 62 mir-356 3' UTR + 5 9
28 mir-50 Intronic + 12 11 63 mir-355 Intergenic 5 10
29 mir-259 Intergenic 12 13 64 mir-358 Intronic - 5 10
30 mir-67 Intronic + 12 18 65 mir-236 Intergenic 5 11
31 mir-46 Intergenic 11 19 66 mir-72 Intergenic 5 14
32 let-7 Intergenic 10 5 67 mir-230 Intergenic 5 15
33 mir-255 Intergenic 10 9 68 lsy-6 Intergenic 5 18
34 mir-246 Intergenic 10 10 69 mir-75 Intergenic 4 14
35 mir-252 Intergenic 10 16 70 mir-249 Intergenic 3 12
  1. Included in the table is the location of each miRNA with respect to C. elegans protein coding genes and the strand of the miRNAs in the protein coding area relative to their host gene. CEL gene relationship indicates the genomic location. "+" or "-" indicates the strand location. CEL, C. elegans; CBR, C. briggsae.