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Table 5 Oligonucleotide primers used for RACE and PCR in this study

From: Alternative splicing of human peroxisome proliferator-activated receptor delta (PPARdelta):effects on translation efficiency and trans-activation ability

Name

Target

Sequence (5'-3')

Forward primers

  

   Ex1:1Fw

exon 1

5'-TTAAGCTTGGTACCCGCGGACCTGGGGATTAATGG

   Ex1:2 Fw

exon 1

5'-AATTCTGCGGAGCCTGCGG

   Ex2Fw

exon 2

5'-ACGTGATACTCACACAGTGG

   Ex2a:1Fw

exon 2a

5'-GGAGCTCCAGGGAATACAATGTTCA

   Ex2a:2Fw

exon 2a

5'-CAGGCCCAGTGGCAGCAAT

   Ex2cFw

exon 2c

5'-GGCACTTGATGCTGTTGAATGGAG

   Ex2eFw

exon 2e

5'-CCAGCTCTCCTTGACCTTGAACCTT

   Ex3Fw

exon 3

5'-AACTGAAGCCCGTGGAGCA

   Ex4Fw

exon 4

5'-GACCACAGCATGCACTTCCT

   Ex8:1Fw

exon 8

5'-AGTGGCTTTGTCACCCGTGAGTTCCTG

   Ex8:2Fw

exon 8

5'-TCCGCAAACCCTTCAGTGATA

   In8Fw

intron 8 *

5'-GGCTGAGCCAGGAGAATCGCTTGA

Reverse primers

  

   Ex2Rev

exon 2

5'-CTCGTTGGTGCATCTGTCTTCA

   Ex2a:1Rev

exon 2a

5'-CGCTCAGGAGGTACTTTGACCTCTTCC

   Ex2a:2Rev

exon 2a

5'-GCTCAGGGATGAACTGGACAACTGAC

   Ex2cRev

exon 2c

5'-ATGCTTCTGCTCAGAACCCAGCTCTCA

   Ex2eRev

exon 2e

5'-AAGAGTGAAGGGCAGCTGAGTCCTGA

   Ex3Rev

exon 3

5'-GAAGCAGTCCTGTAGAGATCAT

   Ex4:1Rev

exon 4

5'-CCCAGTCATAGCTCTGGCATCGTCT

   Ex4:2Rev

exon 4

5'-TGGCTGCTCCATGGCTGATCT

   Ex5Rev

exon 5

5'-GTCACAGCCCATCTGCAGTT

   Ex6Rev

exon 6

5'-CACTTCTCGTACTCCAGCTTC

   Ex7Rev

exon 7

5'-TGCCACCAGCTTCCTCTTC

   Ex8Rev

exon 8

5'-CCAGCCCCTTCTCTGCCT

   Ex9:1Rev

exon 9

5'-CTGGAGCAGAGGGTGCAGCGAGGTCT

   Ex9:2Rev

exon 9

5'-ATGGCATGCCCAGCTGTGC

   In8:1Rev

intron 8*

5'-GATTACAGGTGTGAGCCACCACGTCTG

   In8:2Rev

intron 8*

5'-CCCACATTAACATGACAGCAT

  1. The primers are annotated according to the target exon or intron in the human PPARδ gene.
  2. * Comparable to the 3'-UTR of PPARδ2