From: Co-transcriptional folding is encoded within RNA genes
x | p plain weights | g free energy weights |
---|---|---|
3'cis x | 1/((c - i) log(L - i)) | |G ci |/((c - i) log(L-i)) |
3'trans x | 1/((c - ) log(L - )) | |G ci |/((c - ) log(L - )) |
5'cis x | 1/((i-c) log(i)) | |G ic |/((i-c) log(i)) |
5'trans x | 1/(( - c)log()) | |G ic |/(( - c) log()) |
cis x | 5'cis x - 3'cis x | |
trans x | 3'trans x - 5'trans x | |
3'Cis x | Σ#3'cis3'cis x | |
3'Trans x | Σ#3'trans3'trans x | |
5'Cis x | Σ#5'cis5'cis x | |
5'Trans x | Σ#5'trans5'trans x | |
Cis x | 5'Cis x - 3'Cis x | |
Trans x | 3'Trans x - 5'Trans x | |
|
| |
where x ∈ {p,g}, y ∈ {3'Cis, 3'Trans, 5'Cis, 5'Trans, Cis, Trans} |