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Table 3 Stability values of candidate reference genes as calculated by NormFinder in datasets A-J1.

From: Validation of reference genes for quantitative RT-PCR studies of gene expression in perennial ryegrass (Lolium perenne L.)

Gene

A

B

B2

C

D

E

F

G

H

I

J

eEF1A (m)

0.435

0.435

0.052

0.348

0.420

0.323

0.415

0.126

0.402

0.590

0.508

eEF1A (h)

0.581

0.572

0.068

0.433

0.504

0.532

0.352

0.130

0.316

0.890

0.531

eEF1A (s)

0.331

0.326

0.039

0.249

0.357

0.325

0.191

0.089

0.395

0.141

0.363

TBP-1

0.517

0.505

0.060

0.333

0.588

0.441

0.060

0.262

0.093

0.138

0.279

eIF4A

0.504

0.511

0.061

0.159

0.545

0.476

0.109

0.288

0.212

0.080

0.169

YT521-B

0.429

0.376

0.045

0.985

0.443

0.374

1.149

0.278

0.445

1.042

0.622

E2

0.539

0.540

0.064

0.396

0.501

0.330

0.060

0.176

0.343

0.288

0.153

Best gene/s

eEF1A (s)

eEF1A (s)

eEF1A (s)

eIF4A

eEF1A (s)

eEF1A (m)

TBP-1

eEF1A (s)

TBP-1

eIF4A

E2

Worst gene

eEF1A (h)

eEF1A (h)

eEF1A (h)

YT521-B

TBP-1

eEF1A (h)

YT521-B

eIF4A

YT521-B

YT521-B

YT521-B

Best two genes

  

eEF1A (s)/YT521-B

        

Stability value

  

0.030

        
  1. 1Datasets consist of (A) all 442 perennial ryegrass tissue samples, (B) 422 field-grown samples harvested following different defoliation management, (C) 13 laboratory-grown samples, (D) 218 perennial ryegrass stubble samples, (E) 220 perennial ryegrass leaf samples, (F) four perennial ryegrass callus, inflorescence and root samples, (G) five perennial ryegrass etiolated seedlings of different cultivars, (H) four field-grown samples harvested at the peak of each season, (I) three laboratory-grown samples to evaluate water stress and (J) four laboratory-grown samples to evaluate cold stress.
  2. 2NormFinder analysis carried out using the group property to identify the six different defoliation treatments contained within this dataset. As well as identifying the best reference gene; this analysis gives the combination of the two best reference genes with their combined stability value.