5'RACE RNA-adapter | GCUGAUGGCGAUGAAUGAACACUGCGUUUGCUGGCUUUGAUGAAA |
---|---|
5'RACE PRIMERS | Â |
5'RACE-adapter outer primer Fwd | 5'-GCTGATGGCGATGAATGAACACTG-3' |
ACVRL1 specific outer primer Rev | 5'-GGGAGAGTCCAGTCTCATCCTGAA-3' |
5'RACE-adapter inner primer Fwd | 5'-CGCGGATCCGAACACTGCGTTTGCTGGCTTTGATG-3' |
ACVRL1 specific inner primer Rev | 5'-GCAGTAGTGGTTGACGAACTCGGT-3' |
pALK1 CLONING PRIMERS | |
Cloning primer (-898/-880) Fwd | 5'-GAAGCCATTCTGCTTCCC-3' |
Cloning primer (-587/-569) Fwd | 5'-ACAAATGGGGGACGAAGG-3' |
Cloning primer (-422/-404) Fwd | 5'-AAGGATAGGTAGTGTCCC-3' |
Cloning primer (-284/-263) Fwd | 5'-ACGTTGCCTACAGTCTCG-3' |
Cloning primer (+42/+59) Rev | 5'-ATTCCAGCGTCTTCCTGC-3' |
PCR PRIMERS | Â |
hALK1 primer Fwd | 5'-ATCTGAGCAGGGCGACAGC-3' |
hALK1 primer Rev | 5'-ACTCCCTGTGGTGCAGTCA-3' |
h18S primer Fwd | 5'-CTCAACACGGGAAACCTCAC-3' |
h18S primer Rev | 5'-CGCTCCACCAACTAAGAACG-3' |
hSp1 primer Fwd | 5'-TGCAGCAGAATTGAGTCACC-3' |
hSp1 primer Rev | 5'-TTGGTACTGCTGCCACTCTG-3' |
hGAPDH primer Fwd | 5'-AGCCACATCGCTCAGACAC-3' |
hGAPDH primer Rev | 5'-GCCCAATACGACCAAATCC-3' |
hId1 primer Fwd | 5'-GCTGCTCTACGACATGAACG-3' |
hId1 primer Rev | 5'-CTCCAACTGAAGGTCCCTGA-3' |
ChIP PRIMERS | Â |
pALK1 First region primer (-1032/-1012) Fwd | 5'-CCAGAAGGCTAGGACTAAGA-3' |
pALK1 First region primer (-844/-864) Rev | 5'-CTCCCTGGAACTCTGCTGAC-3' |
pALK1 Second region primer (-864/-844) Fwd | 5'-GTCAGCAGAGTTCCAGGGAG-3' |
pALK1 Second region primer (-662/-682) Rev | 5'-TTAGCCCTGAGGATGGTTTG-3' |
pALK1 Third region primer (-510/-490) Fwd | 5'-AAAACGCATCTGGATTTTGC-3' |
pALK1 Third region primer (-260/-280) Rev | 5'-GAGCCGAGACTGTAGGCAAC-3' |
pALK1 Fourth region primer (-200/-180) Fwd | 5'-CCCACGGCCTGAGTCCAAGG-3' |
pALK1 Fourth region primer (+20/+40) Rev | 5'-GGCCCAGCTCCTCCACTCC-3' |
pEPO primer Fwd (-66/-42) | 5'-AGCCTCTCCCCCACCCCCAGCCCGGCG-3' |
pEPO primer Rev (+31/+9) | 5'-CAGCCCGCGAGTACTCACCGTG-3' |
EMSA PROBES | Â |
Sp1 sites WT pALK1 (-89/-56) Fwd | 5'-CTGAGGGGCTGGGAGCGGCGCGGGGGTGGGTCCC-3' |
Sp1 sites WT pALK1 (-89/-56) Rev | 5'-GGGACCCACCCCCGCGCCGCTCCCAGCCCCTCAG-3' |
Sp1 site MutA -84/-78 pALK1 Fwd | 5'-CTGAGTTTT TT GGAGCGGCGCGGGGGTGGGTCCC-3' |
Sp1 site MutA -84/-78 pALK1 Rev | 5'-GGGACCCACCCCCGCGCCGCTCCA AAAAA CTCAG-3' |
Sp1 site MutB -67/-62 pALK1 Fwd | 5'-CTGAGGGGCTGGGAGCGGCGCGTTTTTTT GTCCC-3' |
Sp1 site MutB -67/-62 pALK1 Rev | 5'-GGGACAAAAAAA CGCGCCGCTCCCAGCCCCTCAG-3' |
pENG (-50 and -24 sites) Fwd | 5'-GCAGGCGGCCTGGGCCCAGCCCCTTCTC-3' |
pENG (-50 and -24 sites) Rev | 5'-GAGAAGGGGCTGGGCCCAGGCCGCCTGC-3' |
pALK1 (-823/-795) Fwd | 5'-TAAAGGTCCATTTGCTGGGGTGGGGGCCC-3' |
pALK1 (-823/-795) Rev | 5'-GGGCCCCCACCCCAGCAAATGGACCTTTA-3' |
AATT probe Fwd | 5'-AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-3' |
AATT probe Rev | 5'-TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT-3' |