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Table 2 Oligonucleotide primers used in this study

From: Transcription of the rat testis-specific Rtdpoz-T1 and -T2 retrogenes during embryo development: co-transcription and frequent exonisation of transposable element sequences

Primers

Sequence (5'-3')

 

(A) Primers for RT-PCR expression profiling

Ex1a-B

   CAGGGAGACAGCTGATACATTTAG

Ex1a-A

   TCCAGCCAGAGAAAGACTCATCATC

T1SP-F1

   CCCACTTCTTCAGAATTCCAGCAT

T1SP-R1

   GTTCAAGACATCAGACAAGAATAA

T1SP-R2

   CTTTAGTCTTCAGGTTCTCTGCTC

T1SP-R3

   AACATCTGAGATCTTTGTAATAAC

T2SP-F1

   CGCACATCTTCAGGATTCTGGTCG

T2SP-R1

   AGACATCAAACAAGAATCCAACAG

T2SP-R2

   CCCTAGTCTTCAGGTGCTCTGTTT

T2SP-R3

   AACATTTGACATTTTTGTAATAAG

2965R

   GAGATTGCCACACAGATGATAGAG

3096R

   TTGACCATATAAACCAACTGACAG

 

(B) 5'- and 3'-RACE gene-specific primers

5' RACE-GSP-R1

   CACCAGGCTGCAGTCTGTGAAGAGG

5' RACE-GSP-R2

   CTTCACTGGCCTCTAATGAGAACC

3' RACE-GSP-F1

   AGATTACCTGTCTGTTTACCTGGG

3' RACE-GSP-F2

   TTGGGCAAAGGTACAGTTCTGGAT

 

(C) Primers for cloning of 5'-UTR for uORF assays

T1 uORF-F

   TTGCGTCCGGCTCTCAGC

T1 uORF-R NcoI

   AACCATGG TTTCTGGAGGTAGTTTGGA

 

(D) Primers for site-directed mutagenesis

F215

   CCTGAAGAGTAAGCAGACCAAGAGAACATAGAG

R247

   CTCTATGTTCTCTTGGTCTGCTTACTCTTCAGG

F373

   GTCTATATAAGCTCAAGGAAGAAGGAAGC

R401

   GCTTCCTTCTTCCTTGAGCTTATATAGAC

 

(E) Primers for luciferase RT-PCR

Luc-F (1265–1288)

   ACATAGCTTACTGGACGAAGACG

Luc-R (1557–1580)

   GTAAGACCTTTCGGTACTTCGTCC