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Table 8 Target-site analysis of integrated episomal Hermes elements in D. melanogaster

From: Transpositionally active episomal hAT elements

Elementa

8 bp Targetb

bp flanking DNAc

input vector

CAGCCTGA

 

80-1

ATGGCCAC

48

160-1

GTGTGAAC

210

160-2

GTGACTAT

94

160-3

AACTCCAC

195

160-4

GTGTAGGC

77

160-5

ATACGGAT

47

160-6

GTGTACAC

36

160-7

ATCCGTAT

25

160-8

GTGTCAAC

287

160-9

CCACACCC

118

160-10

GTGTGAGT

18

160-11

CTCTACAC

207

160-12

GTTTGCAG

28

160-13

ATTCACAT

232

160-14

ATGCGGAC

286

160-15

GTCCGGNN

5

consensus

NTNNNNAN

 
  1. ainput vector was used for transformation; numbers refer elements from transgenic lines.
  2. b8 bp immediately flanking the left inverted terminal repeat of Hermes.
  3. cbp of DNA recovered from integrate element
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BMC Molecular Biology

ISSN: 1471-2199

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