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Table 6 most stably expressed probe sets across brain regions of normally menstruating macaques

From: Microarray analysis of relative gene expression stability for selection of internal reference genes in the rhesus macaque brain

Cycle study: brain region

rank/1433

stability value

gene symbol

probe set ID

exp

1

0.041

ACTG1

213214_x_at

+++

2

0.048

ACTG1

221607_x_at

++++

10

0.062

ACTG1

224585_x_at

++++

17

0.066

ACTG1

201550_x_at

+++

4

0.054

CALM1/CALM2/CALM3

207243_s_at

++++

19

0.067

CLTA

216295_s_at

+++

8

0.060

COX7C

201134_x_at

++

9

0.060

DIAPH1

1560080_at

-

16

0.065

EIF1

212227_x_at

+++

5

0.056

GPX4

201106_at

+++

15

0.063

H6PD

221892_at

+

20

0.067

LDHB

213564_x_at

+++

13

0.062

MVK

36907_at

++

12

0.062

NACAP1

211445_x_at

+++

6

0.059

POLR2A

217420_s_at

-

7

0.059

RAC1

1567457_at

-

11

0.062

SAFB

213635_s_at

-

18

0.067

TCF25

221495_s_at

-

3

0.052

YWHAH

236559_at

-

14

0.063

ZNF592

227507_at

-

Cycle study: cycle phase

rank/1433

stability value

gene symbol

probe set ID

exp

2

0.025

ACTG1

221607_x_at

++++

4

0.026

ACTG1

213214_x_at

+++

9

0.029

ACTG1

224585_x_at

++++

15

0.030

ACTG1

212988_x_at

+++

16

0.030

ACTG1

201550_x_at

+++

11

0.029

ARHGEF7

236416_at

-

1

0.024

CLTA

216295_s_at

+++

8

0.028

CLTA

200960_x_at

+++

17

0.031

COPS6

201405_s_at

+++

10

0.029

COX7C

201134_x_at

++

6

0.028

CSNK2B/LY6G5B

201390_s_at

+++

18

0.031

EEF2

200094_s_at

+++

3

0.026

EIF1

202021_x_at

+++

7

0.028

EIF1

212130_x_at

+++

12

0.029

EIF1

212227_x_at

+++

19

0.031

GPAA1

215690_x_at

++

13

0.030

HINT1

207721_x_at

+++

14

0.030

PPP2CB

201375_s_at

+++

5

0.027

RPS27A/UBB/UBC

200633_at

++++

20

0.031

SNX3

208781_x_at

+++

  1. 1433 probe sets annotated for genes in the independently verified set were analyzed. Probe sets in the table are presented here in alphabetical groupings by annotation irrespective of rank within the top 20. "exp" = gene expression represented by hybridization signal intensity [52].
  2. "+" and "-" symbols represent signal intensity values averaged across all animals and obtained using Affymetrix® GCOS analysis, and global scaling to an average target intensity of 200. (-) = "undetectable", (+) = "signal intensity < 500", (++) = "signal intensity 500-1500", (+++) = "signal intensity 1501-10000". (++++) = "signal intensity > 10000".