Skip to main content

Table 1 Classification of Balanus amphitrite ESTs

From: Construction of an adult barnacle (Balanus amphitrite) cDNA library and selection of reference genes for quantitative RT-PCR studies

Search method

Putative source

E-value

Annotation

N° of sequences

Blast2n vs nt

   

457

InterPro

   

438

Blast2x vs SP

   

458

Blast2x vs KEGG

   

500

   

Functionally annotated

449

   

Unassigned ESTs

149

   

Unknown ESTs

307

 

Ribosomal RNA

  

123

 

Mitochondrial DNA

  

202

 

Genomic DNA

  

580

  

< e-30

 

191

  

> e-30

 

407

  1. Vector clipped ESTs longer than 50 nucleotides and with an E-value > e-5 were functionally annotated whenever possible. Blast hits with E-values < e-5 were included in the unassigned proteins. Unknown ESTs in our dataset are those with no match in sequence databases. These ESTs were considered to be of genomic DNA origin as it is unlikely that the highly conserved mitochondrial gene would not result in a Blast hit.