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Table 1 Potential co-targets of NPAS3 and ARNT screened in this study

From: Molecular analysis of NPAS3 functional domains and variants

Gene name ENCODE ARNT ChIP-seq peaksa Fold regulation by NPAS3b Other identifiers Functions
VGF 3 2.92   Dendritic arborization, proneurogenic [35, 36]
HIST1H4H 5 2.05 Histone H4 G1-S transition, replication licencing factors [37]
ATF5 5 1.83   Cell cycle progression G1-S, stress response, cAMP signalling, SVZ neurogenesis [38, 39]
DHCR24 5 1.75 Seladin-1 Neuroprotective, oxidative stress, inflammation [40]
ZBTB40 5 1.74   Unknown
NCLN 5 1.70 Nicalin Nicalin-NOMO complex, nodal signalling [41]
MAT2A 5 1.67   S-adenosylmethionine synthesis, hypoxia [42]
USP49 5 − 2.10   Deubiquitinase [43]
ANG 5 − 2.16 RNASE5 Alternate ORF transcribed from RNASE4 [44]
ZNF581 5 − 2.24   Unknown
RPL37 5 − 2.33   p53 pathway, MDM2, MDMX [45]
RNASE4 5 − 2.40   Neuroprotective during oxidative stress [44]
TXNIP 5 − 2.57   Oxidative stress response, inflammation [46]
ANKRD37 5 − 4.49   Hypoxia [47, 48]
  1. aScore out of 5 based on calling of peaks in all replicate analyses of the ARNT ChIP-seq data from the ENCODE project experiment ENCSR155KHM
  2. bRegulation observed in [25]