|
AF9 regions
|
Nucleotide position
|
Predicted repeat elements
|
|---|
|
From
|
To
|
Name
|
Class
|
|---|
|
SAR region
|
236,920
|
236,987
|
TWIFB1
|
DNA/hAT
|
|
237,423
|
237,476
|
MER20
|
DNA/hAT
|
|
237,491
|
237,548
|
hAT-80_HM
|
DNA/hAT
|
|
237,594
|
237,636
|
CR1-8_HM
|
NonLTR/CR1
|
|
237,637
|
237,719
|
L1ME4A
|
NonLTR/L1
|
|
238,883
|
238,925
|
GYPSY16-I_AG
|
LTR/Gypsy
|
|
239,516
|
239,716
|
MIR
|
NonLTR/SINE
|
|
239,786
|
239,871
|
ZAPHOD
|
DNA
|
| |
241,267
|
241,318
|
Polinton-1_XT
|
DNA/Polinton
|
|
241,475
|
241,555
|
Hoyak1
|
DNA/hAT
|
|
241,769
|
241,847
|
L4
|
NonLTR/RTEX
|
|
242,176
|
242,276
|
ATCOPIA38_I
|
LTR/Copia
|
|
242,849
|
242,893
|
BGLII_LTR
|
ERV/ERV2
|
|
242,989
|
243,024
|
L1-1_ET
|
NonLTR/L1
|
|
243,397
|
243,483
|
ERV1-4-EC_I
|
ERV/ERV1
|
|
244,480
|
244,530
|
hATw-2_SP
|
DNA/hAT
|
|
244,901
|
245,043
|
CHARLIE7
|
DNA/hAT
|
|
245,627
|
245,728
|
ERE2_EH
|
Interspersed_Repeat
|
|
Non-SAR region
|
71,936
|
71,999
|
BEL1_MH-I
|
LTR/BEL
|
|
72,081
|
72,368
|
AluJr4
|
NonLTR/SINE/SINE1
|
|
72,447
|
72,695
|
AluJ
|
Interspersed_Repeat
|
|
73,459
|
73,707
|
MIR
|
NonLTR/SINE
|
|
73,708
|
73,761
|
TE-X-4_DR
|
Interspersed_Repeat
|
|
74,030
|
74,304
|
AluJb
|
NonLTR/SINE/SINE1
|
|
74,895
|
74,998
|
CHARLIE5
|
DNA/hAT
|
|
75,006
|
75,169
|
CHARLIE5
|
DNA/hAT
|
|
75,192
|
75,466
|
AluJr
|
NonLTR/SINE/SINE1
|
- The AF9 SAR region is located at coordinates 236,059 to 246,292 [Ensembl:ENSG00000171843]. The nucleotide position, name and class of the predicted repeat elements are shown. The region amplified by the reverse primer (AF9 236,211 R) is from coordinates 236,059 to 236,211 while the region amplified by the forward primer (AF9 245,507 F) is from coordinates 245,507 to 246,292. The amplified SAR region contains one repeat element, namely ERE2_EH (at coordinates 245,627–245,728). The AF9 non-SAR region is located at coordinates 71,116 to 75,277 [Ensembl:ENSG00000171843]. The nucleotide position, name and class of the predicted repeat elements are shown. The region amplified by the reverse primer (AF9 71,282 R) is from coordinates 71,116 to 71,282 while the region amplified by the forward primer (AF9 74,494 F) is from coordinates 74,494 to 75,277. The amplified non-SAR region contains three repeat elements, namely two CHARLIE5 (at coordinates 74,895–74,998 and 75,006–75,169) and one AluJr (at coordinates 75,192–75,466)
