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Table 2 Repeat elements in the AF9 SAR and non-SAR regions predicted by CENSOR program

From: Matrix association region/scaffold attachment region (MAR/SAR) sequence: its vital role in mediating chromosome breakages in nasopharyngeal epithelial cells via oxidative stress-induced apoptosis

AF9 regions Nucleotide position Predicted repeat elements
From To Name Class
SAR region 236,920 236,987 TWIFB1 DNA/hAT
237,423 237,476 MER20 DNA/hAT
237,491 237,548 hAT-80_HM DNA/hAT
237,594 237,636 CR1-8_HM NonLTR/CR1
237,637 237,719 L1ME4A NonLTR/L1
238,883 238,925 GYPSY16-I_AG LTR/Gypsy
239,516 239,716 MIR NonLTR/SINE
239,786 239,871 ZAPHOD DNA
  241,267 241,318 Polinton-1_XT DNA/Polinton
241,475 241,555 Hoyak1 DNA/hAT
241,769 241,847 L4 NonLTR/RTEX
242,176 242,276 ATCOPIA38_I LTR/Copia
242,849 242,893 BGLII_LTR ERV/ERV2
242,989 243,024 L1-1_ET NonLTR/L1
243,397 243,483 ERV1-4-EC_I ERV/ERV1
244,480 244,530 hATw-2_SP DNA/hAT
244,901 245,043 CHARLIE7 DNA/hAT
245,627 245,728 ERE2_EH Interspersed_Repeat
Non-SAR region 71,936 71,999 BEL1_MH-I LTR/BEL
72,081 72,368 AluJr4 NonLTR/SINE/SINE1
72,447 72,695 AluJ Interspersed_Repeat
73,459 73,707 MIR NonLTR/SINE
73,708 73,761 TE-X-4_DR Interspersed_Repeat
74,030 74,304 AluJb NonLTR/SINE/SINE1
74,895 74,998 CHARLIE5 DNA/hAT
75,006 75,169 CHARLIE5 DNA/hAT
75,192 75,466 AluJr NonLTR/SINE/SINE1
  1. The AF9 SAR region is located at coordinates 236,059 to 246,292 [Ensembl:ENSG00000171843]. The nucleotide position, name and class of the predicted repeat elements are shown. The region amplified by the reverse primer (AF9 236,211 R) is from coordinates 236,059 to 236,211 while the region amplified by the forward primer (AF9 245,507 F) is from coordinates 245,507 to 246,292. The amplified SAR region contains one repeat element, namely ERE2_EH (at coordinates 245,627–245,728). The AF9 non-SAR region is located at coordinates 71,116 to 75,277 [Ensembl:ENSG00000171843]. The nucleotide position, name and class of the predicted repeat elements are shown. The region amplified by the reverse primer (AF9 71,282 R) is from coordinates 71,116 to 71,282 while the region amplified by the forward primer (AF9 74,494 F) is from coordinates 74,494 to 75,277. The amplified non-SAR region contains three repeat elements, namely two CHARLIE5 (at coordinates 74,895–74,998 and 75,006–75,169) and one AluJr (at coordinates 75,192–75,466)