Table 4 Location-associated lncRNAs and corresponding protein-coding genes
Gene | Position | IRI RPKM | Sham RPKM | Fold change | Regu-lation | Gene | Position | IRI RPKM | Sham RPKM | Fold change | Regulation |
|---|---|---|---|---|---|---|---|---|---|---|---|
NONRATT006032.2 | chr10:88791856-88796598 | 7.831 | 1.444 | 5.424 | Up | Stat3 | chr10:88790406-88842233 | 273.503 | 58.99 | 4.667 | Up |
NONRATT006033.2 | chr10:88792525-88797203 | 3.650 | 0.685 | 5.328 | Up | ||||||
NONRATT006034.2 | chr10:88793064-88796762 | 26.141 | 3.089 | 8.463 | Up | ||||||
NONRATT006035.2 | chr10:88809397-88810399 | 5.958 | 2.053 | 2.902 | Up | ||||||
NONRATT009101.2 | chr13:105055964-105056435 | 5.069 | 0.735 | 6.894 | Up | Tgfb2 | chr13:105041053-105140780 | 6.410 | 3.680 | 1.742 | Up |
NONRATT009102.2 | chr13:105137574-105138070 | 4.744 | 0.698 | 6.794 | Up | ||||||
NONRATT011994.2 | chr16:50029795-50031018 | 4.221 | 1.928 | 2.189 | Up | Tlr3 | chr16:50016857-50030314 | 14.447 | 6.461 | 2.236 | Up |
NONRATT020804.2 | chr4:146777105-146777750 | 3.006 | 13.001 | 0.231 | Down | Atg7 | chr4:146598416-146776407 | 9.284 | 7.338 | 1.265 | Up |
NONRATT021717.2 | chr4:146778556-146779157 | 4.377 | 12.106 | 0.362 | Down | ||||||
NONRATT026198.2 | chr7:126685426-126687282 | 19.157 | 51.507 | 0.372 | Down | Ppara | chr7:126619196-126681752 | 20.588 | 65.117 | 0.316 | Down |
NONRATT029969.2 | chr9:47035533-47036225 | 119.680 | 31.350 | 3.818 | Up | Il1r1 | chr9:46997798-47035275 | 68.896 | 31.162 | 2.211 | Up |
NONRATT029995.2 | chr9:54304608-54308682 | 8.083 | 0.973 | 8.310 | Up | Stat1 | chr9:54287540-54327958 | 124.250 | 67.559 | 1.839 | Up |