Skip to main content

Table 3 Matrix similarity scores for putative binding sites

From: New insights into SRY regulation through identification of 5' conserved sequences

Region

Site

Bovine

Human

Goat

Porcine

Mean

A

HOXF

0.96

0.988

0.947

-

0.965

 

GATA (a)

0.924

0.963

0.956

-

0.948

 

GATA (b)

0.944

0.972

0.916

-

0.944

 

PITI

0.942

0.93

0.945

-

0.939

 

GFI1

0.96

0.911

0.918

-

0.930

 

HOXC

0.911

0.922

0.951

-

0.928

 

OCTP

0.922

0.875

0.968

-

0.922

 

EVI1

0.958

0.86

0.904

-

0.907

 

TBPF

0.923

0.813

0.933

-

0.890

B

RBPF

0.944

0.943

0.961

-

0.949

 

RORA

0.958

0.983

0.897

-

0.946

 

HAML

0.943

0.935

0.943

-

0.940

 

HOXF

0.884

0.889

0.884

-

0.886

 

MEF2

0.905

0.885

0.775

-

0.855

 

SRFF

0.697

0.717

0.681

-

0.698

C

MZF1

1.000

-

1.000

0.995

0.998

 

ZFHX

0.984

-

0.984

0.984

0.984

 

ETSF

0.983

0.982

0.983

-

0.983

 

FKHD

0.962

-

0.962

0.962

0.962

 

GATA

0.973

0.936

0.973

0.954

0.959

 

IRFF

0.964

-

0.887

0.945

0.932

 

CREB

0.938

-

0.938

0.914

0.930

 

HOXF

0.975

0.870

0.975

0.857

0.919

 

BRNF

0.946

-

0.906

0.899

0.917

 

PARF

0.940

-

0.864

0.921

0.908

 

ETSF

0.880

-

0.890

0.925

0.898

 

OCT1

0.905

-

0.894

0.894

0.898

 

SORY

0.879

-

0.879

0.927

0.895

 

PLAG

0.900

-

0.882

0.887

0.890

 

BRNF

0.810

-

0.810

0.916

0.845

 

LHXF

0.839

0.846

0.839

0.849

0.843

 

OCT1

0.846

-

0.841

0.820

0.836

 

GZF1

0.761

0.858

0.858

-

0.826

 

HNF1

0.801

-

0.803

0.819

0.808

 

PAX6

0.778

-

0.769

0.781

0.776

D

SORY

-

0.991

0.987

0.986

0.988

 

MOKF

0.983

0.983

0.983

-

0.983

 

HOMF

0.989

0.950

0.989

-

0.976

 

SATB

0.958

-

0.958

0.967

0.961

 

CLOX

0.948

0.967

0.948

-

0.954

 

CDXF

0.980

0.855

0.980

0.980

0.949

 

PARF

0.921

-

0.921

0.995

0.946

 

RBIT

0.924

0.965

0.924

-

0.938

 

NKXH

0.933

0.928

0.933

-

0.931

 

HOXF

0.923

-

0.923

0.942

0.929

 

NKXH

0.946

-

0.835

1.000

0.927

 

FKHD

0.922

-

0.922

0.909

0.918

 

NFKB

0.864

0.992

0.841

0.947

0.911

 

CREB

0.918

-

0.918

0.893

0.910

 

MEF2

-

0.890

0.791

0.991

0.891

 

OCT1

0.849

0.954

0.849

-

0.884

 

OCT1

0.873

0.893

0.873

-

0.880

 

SRFF

0.844

0.855

0.918

0.884

0.875

 

HNF1

0.943

0.854

0.828

-

0.875

 

PLZF

-

0.883

0.874

0.866

0.874

 

PARF

0.860

-

0.865

0.897

0.874

 

OCT1

0.862

-

0.856

0.899

0.872

 

FKHD

0.867

0.861

0.836

0.919

0.871

 

PARF

0.867

-

0.867

0.867

0.867

 

BRNF

0.902

0.785

0.902

-

0.863

 

CDXF

0.872

0.850

0.870

0.860

0.863

 

MYT1

0.875

-

0.775

0.875

0.842

 

BRNF

0.805

0.892

0.819

-

0.839

 

CREB

0.844

-

0.833

0.833

0.837

 

BRNF

0.796

-

0.807

0.889

0.831

 

BRNF

0.790

-

0.790

0.898

0.826

 

OCT1

0.790

-

0.783

-

0.787

  1. List of matrix similarity scores (the similarity of each putative site to the canonical binding site for the relevant transcription factor) generated by MatInspector software for each putative transcription factor binding site in each species, for each region of homology. Matrix scores are ranked from the highest to lowest mean score.
Back to article page

BMC Molecular Biology

ISSN: 1471-2199

Contact us