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Table 6 Summary of the numbers of reads from stress-treated small RNA libraries obtained by 454 sequencing

From: Small RNAs and the regulation of cis-natural antisense transcripts in Arabidopsis

Small RNA libraries

Abio 1

Abio 2

Abio 3

Abio 4

Bio 1

Bio 2

Small RNA reads (>= 18)

21203

26246

17824

12465

33289

37599

Unique reads (duplicates removed)

13542

15221

11262

8325

15774

26806

Match genomic DNAs

5431

5882

4514

4198

6236

9613

Match genes + introns + UTR

2917

3183

2444

2102

3933

5914

Match genes - introns + UTR

2814

3063

2357

2038

3873

5667

Matching NAT genes

30

22

19

19

17

24

  1. Abiotic stress-treated libraries
  2. Abio1: Cold treatment, 4°C
  3. Abio2: Draught-treatment and ABA treatment
  4. Abio3: Salt treatment and copper treatment
  5. Abio4: UV treatment and heat treatment
  6. Bio1: Pseudomonas syringae DC3000, and DC3000 (avrRpt2) infection
  7. Bio2: A.b., and B. c. infection