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Table 3 Percentage of clones with both exchanges obtained with different oligonucleotides

From: Simultaneous targeted exchange of two nucleotides by single-stranded oligonucleotides clusters within a region of about fourteen nucleotides

Positions 153 and 147 (in different distances to the 3'-end)

Oligonucleotide

Distance of position 147 to the 3'-end (number of nucleotides)

number of clones per 10 6 transfected cells

% of clones with both exchanges

C47-153-147

6

22

16

C53-153-147

12

13,3

54

C59-153-147

18

9,7

63

C65-153-147

24

8,7

47

C71-153-147

30

6,3

62

Positions 151 + x (TA-clamps)

Oligonucleotide

Distance (nucleotides) to the first position

number of clones per 10 6 transfected cells

% of clones with both exchanges

H1-151

-

4.86

-

H7-151-141

-10

4.00

33

H5-151-144

-7

1.67

50

H3-151-147

-4

1.83

91

H2-151-150

-1

1.33

100

H4-151-156

5

2.67

63

H6-151-159

8

1.83

27

H8-151-165

14

4.00

8

H9-151-168

17

6.00

0

Positions 153 + x (TA-clamps)

Oligonucleotide

Distance (nucleotides) to the first position

number of clones per 10 6 transfected cells

% of clones with both exchanges

H153-1T

-

18.00

-

C-153-147

-6

4.67

50

C-153-150

-3

1.00

100

C-153-156

3

2.67

89

C-153-159

6

5.00

35

Positions 151 + x (PTO modifications)

Oligonucleotide

Distance (nucleotides) to the first position

number of clones per 10 6 transfected cells

% of clones with both exchanges

O45-151-147

-4

3.50

64

O45-151-150

-1

0.33

100

O42-151-156

5

6.50

41

O45-151-159

8

1.33

8

Positions 151 + 159, different lengths (PTO modifications)

Oligonucleotide

Length of the oligonucleotides (nucleotides)

number of clones per 10 6 transfected cells

% of clones with both exchanges

O25-151-159

25

2.83

12

O30-151-159

30

3.83

13

O45-151-159

45

1.33

13

O48-151-159

48

2.00

17

  1. The number of HAT resistant clones per 106 transfected cells and the percentage of clones showing the simultaneous exchange of both mismatches is given depending on the distance of the second mismatch nucleotide to the 3'-end of the oligonucleotide, the distance of the second mismatch to the first position or length of the oligonucleotides.