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Table 4 Relative frequency of motifs in 5' US, CDS and 3' DS in experimental and TcruziDB databases.

From: Functionally related transcripts have common RNA motifs for specific RNA-binding proteins in trypanosomes

Motif

Molecule region

Experimental dataset

TcruziDB

 

5' US

0.00

0.35

UBP1m

CDS

0.10

0.08

 

3' DS

2.07

0.81

 

5' US

0.00

0.04

RBP3m

CDS

0.17

0.06

 

3' DS

0.72

0.16

  1. Frequency (hits/kb) of motifs in experimental and TcruziDB CL Brener genomic sequence Release 5.1 fractioned in 3 subsets compose of 5' US, CDS and 3'DS (see Methods for details).
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BMC Molecular Biology

ISSN: 1471-2199

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