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Table 1 Significant patterns found with POCO from 1000 bp upstream sequences of C. elegans and C. briggsae

From: Identification of phylogenetically conserved sequence motifs in microRNA 5' flanking sites from C. elegans and C. briggsae

Index Pattern C. elegans C. briggsae Index Pattern C. elegans C. briggsae
1 GAGA 11.61 15.38 34 ANAGNNNC 6.76 7.64
2 GANNNNGA 11.29 14.81 35 GGNNGA 6.63 8.29
3 GANANNG 10.95 13.06 36 GANGNG 6.62 8.61
4 ANAGNG 10.93 10.99 37 GNANNNGG 6.62 8.25
5 ANNNGNAG 9.74 11.04 38 GNANGNG 6.27 7.42
6 GANNNAG 9.70 11.64 39 GNAGNNNG 6.25 8.05
7 AGNGNNNA 9.50 9.56 40 GNNGNGNA 5.99 8.04
8 ANGNNGA 9.49 11.14 41 AGNGNNC 5.92 5.69
9 AGNGNA 9.40 9.60 42 GGNGG 5.91 7.64
10 GAGNG 9.36 9.48 43 GNNANNGG 5.91 6.96
11 AGNGA 9.35 11.93 44 ANNGGNNG 5.79 7.29
12 ANNGNNGA 9.01 10.00 45 GNGNNGG 5.73 7.65
13 GAANG 8.85 11.34 46 GNGNANG 5.73 6.83
14 AGNAG 8.75 11.58 47 ANGNGG 5.72 7.46
15 ANANGNG 8.65 10.35 48 ANNGGNG 5.59 6.84
16 GNNNANGA 8.53 11.19 49 ANNGNGG 5.56 6.56
17 AGNGNG 8.44 8.23 50 GGNNNANG 5.48 7.39
18 ANNNAGNG 8.33 10.28 51 ANNNGGC 5.45 5.79
19 GANGNNG 8.17 10.05 52 ANGNGNG 5.36 7.00
20 GNGNGNG 8.07 9.44 53 AGGNG 5.34 7.09
21 GNNGNNGA 7.91 9.69 54 GGNNNNGG 5.28 7.55
22 ANGAG 7.79 10.74 55 GNGNNANG 5.27 6.83
23 ANANGG 7.78 9.83 56 ANGGNG 5.26 6.61
24 AAGNG 7.75 10.14 57 AGNGG 5.21 6.80
25 GANNGNG 7.65 8.82 58 GGNNAG 5.07 6.65
26 GNNNGAG 7.59 9.32 59 GTNGNNNG 5.00 5.58
27 GNGAG 7.58 9.06 60 GGNNNNAG 4.92 6.89
28 AGNNNGNG 7.52 8.58 61 ANGGNNNG 4.89 6.69
29 GNNGAG 7.41 9.65 62 CGANNG 4.86 5.27
30 AGNANNG 7.41 9.22 63 ANGNNNCG 4.42 5.47
31 ANNGNGNG 7.17 8.95 64 GGNNNGG 4.38 7.20
32 GNNGNGA 6.92 8.44 65 ANNNGGNC 4.26 5.18
33 AGNNNAG 6.80 8.61     
  1. The patterns are listed in the order of their average occurrences.