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Table 1 Genes selected for expression analysis

From: Characterization of housekeeping genes in zebrafish: male-female differences and effects of tissue type, developmental stage and chemical treatment

Gene Name

Gene Symbol

Cellular Function

Primer Sequence (5'-3')

Reference

Accession #

bactin1

bactin1

Cytoskeleton

F) CGAGCAGGAGATGGGAACC

14

AF057040

   

R) CAACGGAAACGCTCATTGC

  

tubulin, alpha 1

tuba1

Cytoskeleton

F) CCTGCTGGGAACTGTATTGT

*

AF029250

   

R) TCAATGAGTTCCTTGCCAAT

  

glyceraldehyde-3-phosphate dehydrogenase

gapdh

Glycolysis enzyme

F) GTGGAGTCTACTGGTGTCTTC

15

BC083506

   

R) GTGCAGGAGGCATTGCTTACA

  

glucose-6-phosphate dehydrogenase

g6pd

Glycolysis enzyme

F) GTCCCGAAAGGCTCCACTC

9

BM182602

   

R) CCTCCGCTTTCCTCTC

  

TATA-box-binding protein

tbp

Transcription

F) CGGTGGATCCTGCGAATTA

*

NM_200096

   

R) TGACAGGTTATGAAGCAAAACAACA

  

beta-2-microglobulin

b2m

Major histocompatibility complex

F) GCCTTCACCCCAGAGAAAGG

*

BC062841

   

R) GCGGTTGGGATTTACATGTTG

  

elongation factor 1-alpha

elfa

Translation

F) CTTCTCAGGCTGACTGTGC

16

AY422992

   

R) CCGCTAGCATTACCCTCC

  

18s ribosomal RNA

18s

Ribosome subunit

F) TCGCTAGTTGGCATCGTTTATG

17

BX296557

   

R) CGGAGGTTCGAAGACGATCA

  

cytochrome P450, family 19, subfamily A, polypeptide 1b

cyp19a1b

Steroid biosynthesis

F) AAAGAGTTACTAATAAAGATCCACCGGTAT

13

AF226619

   

R) TCCACAAGCTTTCCCATTTCA

  

cytochrome P450, family 1, subfamily A

cyp1a

Xenobiotic metabolism

F) GCATTACGATACGTTCGATAAGGAC

18

NM_131879

   

R) GCTCCGAATAGGTCATTGACGAT

  
  1. The first 8 were candidate housekeeping genes. cyp19a1b and cyp1a, targets of ER and AhR mediated signal transduction, respectively, were used to tests effects of normalization on apparent gene expression. Asterisks (*) indicate primers designed in this study.