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Table 1 Duplicated genes with multiple TE exonization

From: Biased exonization of transposed elements in duplicated genes: A lesson from the TIF-IA gene

No. of exons

TE

Gene

Accession

Description

Dup. gene

Dup. accession

Dup. description

3

AluSx AluJo MER5A

SRPN

NM_022807

small nuclear ribonucleo-protein polypeptide N

SNRPB

BC003530

small nuclear ribonucleo-protein polypeptides B and B1

2

AluSx AluJb

NCF1 pseudo-gene

BC002816

neutrophil cytosolic factor 1 pseudo-gene

NCF1

NM_000265

neutrophil cytosolic factor 1

2

AluSx AluJb

YY1AP1

BC025272

YY1 associated protein

GON4L

BX648802

gon-4-like protein

2

AluSp MIR

NSUN5C

NM_148936

NOL1/NOP2/Sun domain family member 5C

NSUN5

NM_018044

NOL1/NOP2/Sun domain family, member 5

2

AluY AluJb

RAP1A

NM_001010935

RAP1A, member of RAS oncogene family

RAP1B

NM_015646

RAP1B, member of RAS oncogene family

2

AluSx MSTA

POLR2J2

BC086857

RPB11b1beta protein (DNA directed RNA polymerase II polypeptide J-related)

POLR2J2

NM_032958

DNA directed RNA polymerase II polypeptide

2

AluSg/x AluJb

ZNF611

NM_030972

zinc finger protein 611

ZNF701

NM_018260

zinc finger protein 701

2

AluSq AluSp

ZNF702

NM_024924

zinc finger protein 702

ZNF137

NM_003438

zinc finger protein 137

3

MSTA MSTA MSTA

PMS2L14

AB017005

PMS2L14 protein.

PMS2

NM_000533

PMS2 postmeiotic segregation increased 2 isoform

2

AluJb AluY

ZNF283

AK098175

zinc finger protein 283

ZNF420

NM_144689

zinc finger protein 420

2

AluJo L1MA9

ZNF678

NM_178549

zinc finger protein 678

ZNF479

AF277624

zinc finger protein 479

2

AluSx LTR49

PILRB

NM_013440

paired immunoglobulin-like type 2 receptor beta

PVRIG

NM_024070

poliovirus receptor related immunoglobulin