From: Biased exonization of transposed elements in duplicated genes: A lesson from the TIF-IA gene
No. of exons | TE | Gene | Accession | Description | Dup. gene | Dup. accession | Dup. description |
---|---|---|---|---|---|---|---|
3 | AluSx AluJo MER5A | SRPN | NM_022807 | small nuclear ribonucleo-protein polypeptide N | SNRPB | BC003530 | small nuclear ribonucleo-protein polypeptides B and B1 |
2 | AluSx AluJb | NCF1 pseudo-gene | BC002816 | neutrophil cytosolic factor 1 pseudo-gene | NCF1 | NM_000265 | neutrophil cytosolic factor 1 |
2 | AluSx AluJb | YY1AP1 | BC025272 | YY1 associated protein | GON4L | BX648802 | gon-4-like protein |
2 | AluSp MIR | NSUN5C | NM_148936 | NOL1/NOP2/Sun domain family member 5C | NSUN5 | NM_018044 | NOL1/NOP2/Sun domain family, member 5 |
2 | AluY AluJb | RAP1A | NM_001010935 | RAP1A, member of RAS oncogene family | RAP1B | NM_015646 | RAP1B, member of RAS oncogene family |
2 | AluSx MSTA | POLR2J2 | BC086857 | RPB11b1beta protein (DNA directed RNA polymerase II polypeptide J-related) | POLR2J2 | NM_032958 | DNA directed RNA polymerase II polypeptide |
2 | AluSg/x AluJb | ZNF611 | NM_030972 | zinc finger protein 611 | ZNF701 | NM_018260 | zinc finger protein 701 |
2 | AluSq AluSp | ZNF702 | NM_024924 | zinc finger protein 702 | ZNF137 | NM_003438 | zinc finger protein 137 |
3 | MSTA MSTA MSTA | PMS2L14 | AB017005 | PMS2L14 protein. | PMS2 | NM_000533 | PMS2 postmeiotic segregation increased 2 isoform |
2 | AluJb AluY | ZNF283 | AK098175 | zinc finger protein 283 | ZNF420 | NM_144689 | zinc finger protein 420 |
2 | AluJo L1MA9 | ZNF678 | NM_178549 | zinc finger protein 678 | ZNF479 | AF277624 | zinc finger protein 479 |
2 | AluSx LTR49 | PILRB | NM_013440 | paired immunoglobulin-like type 2 receptor beta | PVRIG | NM_024070 | poliovirus receptor related immunoglobulin |