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Table 1 ΔG of SD:aSD interactions.

From: Translation initiation region sequence preferences in Escherichia coli

Shine-Dalgarno

ΔG37°C

ΔG20°C

 

(kcal/mol)

(kcal/mol)

UAAGGAGG

-9.4

-12.6

AAAGGAGG

-9.3

-12.3

AUAGGAGG

-7.7

-10.1

AUUGGAGG

-6.9

-9.4

AUUCGAGG

-3.9

-5.7

AUUGGAG C

-4.7

-6.7

AUUCCAGG

-1.0

-2.1

AUUCGAG C

-1.7

-2.9

AUUCCUGG

-0.1

-1.3

AUUCCUCG

NA

NA

  1. ΔG of SD:aSD interactions at 37°C and 20°C, including 8 nucleotides from mRNA and 8 nucleotides from 16S rRNA. Free energy was calculated using hybrid-min from the UNAFold package [45].