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Figure 4 | BMC Molecular Biology

Figure 4

From: Expression profiling of serum inducible genes identifies a subset of SRF target genes that are MKL dependent

Figure 4

Known CArG boxes in serum inducible genes. The upper panel lists the positions and sequences of the known CArG boxes of the MKL-dependent or -independent genes. The bases that differ from the CArG box consensus sequence are in bold. The bottom panel shows the multilevel consensus sequence that was derived from each of these groups of CArG boxes. Below the consensus sequence is the simplified position-specific probability matrix that specifies the probability of each possible base appearing at each position in an occurrence of the motif multiplied by 10. 'a' denotes a probability that is almost or equal to 1. The consensus sequence is the best match to the CArG boxes oriented on either strand.

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