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Table 1 Transcripts with potential DND1 binding sequences

From: Transcripts that associate with the RNA binding protein, DEAD-END (DND1), in embryonic stem (ES) cells

Gene

Number of transcripts 1

DND1 interacting sequence 2

Interaction with DND1 3

P27 (CDKN1B)

4

CDKN1B-001 (ENST00000228872)

1196- TTTTTCCTTATTT -1208

1236- TTTTTACCTTTT -1247

CDKN1B-002 (ENST00000442489)

537- TTTTTCCTTATTT -549

+

HPRT1

3

-

-

OCT4 (POU5F1)

6

POU5F1-001 (ENST00000434616)

1345- TTGATTTT -1352

POU5F1-002 (ENST00000412166)

1088- TTGATTTT -1095

POU5F1-004 (ENST00000463773)

621- TTGATTTT -628

+

SOX2

1

-

+

NANOG

3

NANOG-001 (ENST00000229307)

2042- TTGATTTT -2049

+

LIN28

2

LIN28A-001 (ENST00000326279)

3879- TTGATTTT -3886

LIN28A-201 (ENST00000254231)

3326- TTGATTTT -3333

+

KLF4

7

-

-

MYC

5

MYC-001 (ENST00000377970)

2283-TTGATTTT -2290

-

TP53

15

-

+

LATS2

3

LATS2-001 (ENST00000382592)

4176- TTTTATTTT -4184

+

BAX

12

-

+

BCLX (BCL2L1)

10

-

+

  1. 1Number of expressed transcripts as reported in Ensembl (http://www.ensembl.org/Homo_sapiens/Info/Index), not including duplications
  2. 2 The specific transcript(s) that encodes previously described DND1 interacting sequences [11]. The nucleotide position of the DND1 interacting sequence within the full-length transcript is indicated.
  3. 3 As experimentally determined and shown in Figure 2 and 3.