Table 1 Selection of candidate reference genes from microarray data.
Gene symbol | Definition | Average intensity | Primary multi-fun term |
|---|---|---|---|
ssrA | tmRNA | 13.88 | cell processes -> protection -> drug resistance/sensitivity |
rnpB | RnpB RNA; catalytic subunit of RNAse P | 13.42 | information transfer -> RNA related -> RNA degradation |
pflC | probable pyruvate formate lyase 2 activating enzyme | 8.650 | information transfer -> protein related -> posttranslational modification |
hycG | hydrogenase 3 and formate hydrogenlyase complex | 8.09 | metabolism -> energy metabolism, carbon -> anaerobic respiration |
uxuB | D-mannonate oxidoreductase | 8.94 | metabolism -> carbon utilization -> carbon compounds |
ygjD | YgjD, target for YeaZ protease | 9.74 | regulation -> type of regulation -> posttranscriptional -> proteases, cleavage of compounds |
uxuR | UxuR-fructuronate | 8.53 | information transfer -> RNA related -> Transcription related |
yajR | YajR MFS transporter | 8.54 | cell processes -> protection -> drug resistance/sensitivity |
asnA | asparagine synthetase A | 8.78 | metabolism -> biosynthesis of building blocks -> amino acids -> asparagine |
hcaT | HcaT MFS transporter | 8.292 | cell structure -> membrane |
ldnT | L-idonate/5-ketogluconate/gluconate transporter | 8.991 | cell structure -> membrane |
yghB | conserved inner membrane protein | 9.01 | cell structure -> membrane |
ugpQ | glycerophosphodiester phosphodiesterase, cytosolic | 9.16 | metabolism -> central intermediary metabolism -> misc. glycerol metabolism |
metL | aspartate kinase/homoserine dehydrogenase | 8.973 | metabolism -> biosynthesis of building blocks -> amino acids -> homoserine |
pbpC | putative peptidoglycan enzyme | 8.73 | cell structure -> murein |
ilvY | IlvY DNA binding transcriptional dual regulator | 9.320 | information transfer -> RNA related -> Transcription related |
phnN | ribose 1,5-bisphosphokinase | 8.05 | metabolism -> metabolism of other compounds -> phosphorous metabolism |
cysG | uroporphyrin III C-methyltransferase [multifunctional] | 8.219 | metabolism -> biosynthesis of building blocks -> cofactors, small molecule carriers -> heme, porphyrine |
cca | tRNA nucleotidyltransferase | 9.19 | information transfer -> RNA related -> RNA modification |
rrsA | rrsA 16S ribosomal RNA | 14.6 | cell structure -> ribosomes |
ihfB | integration host factor β subunit |  |  |