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Table 2 Primer pairs for reverse-transcriptase quantitative PCR and RACE-PCR

From: A cDNA microarray, UniShrimpChip, for identification of genes relevant to testicular development in the black tiger shrimp (Penaeus monodon)

Primer

 

Sequence

Size (bp)

PCR Efficiencies

Reverse-transcriptase quantitative PCR

 

CSN2

 

F: 5'-GAGGATGACCTGAAGAAGGGAACA-3'

145

97.1%

  

R: 5'-TAAGTGGATGGGGAATTGCCG-3'

  

CSN4

 

F: 5'-GCAGGGCAGCAGCGTTCAAGA-3'

111

96.2%

  

R: 5'-ACGGATGATGCGGTCCAGGTG-3'

  

CSN5

 

F: 5'-CGAGGGAACGGAGACAAGAGT-3'

148

97.5%

  

R: 5'-TCCAGACAGCCAGCAACCATA-3'

  

CSN6

 

F: 5'-CAGTTTCTCTTCACCCTCTGGTCATA-3'

115

97.6%

  

R: 5'-GTTTGTTTTCCAATCAAGGCTCC-3'

  

CSN7A

 

F: 5'-CTCTTTGCTTATGGTGTTTATGCTGA-3'

128

99.8%

  

R: 5'-ATACTCTTCTGCCCCGTTGCC-3'

  

CSN8

 

F: 5'-TGGTTGCTCGGGCATATACATC-3'

128

99.0%

  

R: 5'-AATCATTCTCGTGGGTTCGTCAT-3'

  

SUMO-1

 

F: 5'-AGAAGGGGAAGGGAACGAATACA-3'

148

98.2%

  

R: 5'-ACGCAGCGATGCTACAGGGA-3'

  

Zipper

 

F: 5'-TGTGAGACAGACCTGAACGACCTT-3'

122

95.4%

  

R: 5'-ATCTACACGCATCATTGCTTGGGC-3'

  

EF-1α

 

F: 5'-TTCCGACTCCAAGAACGACC-3'

122

96.5%

  

R: 5'-GAGCAGTGTGGCAATCAAGC-3'

  

RACE-PCR

CSN5

3' RACE-PCR

F: 5'-GACCTACCCAAAGGGATACAAGCCACCG-3'

  

CSN6

5' RACE-PCR

R: 5'-TGGGCTAACATCACTGAGGGCACTACCG-3'

  
 

3' RACE-PCR

F: 5'-GTCAGCGAGGCGAGGTGGAGTTCAAT-3'

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