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Table 1 Summary of GO term classes enriched in SSH libraries of cadmium and phenanthrene responsive genes

From: High throughput nano-liter RT-qPCR to classify soil contamination using a soil arthropod

  Term Cadmium* Phenanthrene* GO IDs     
Cellular Compartment vacuolar membrane + - GO:0005774 GO:0044437    
  mitochondrial inner membrane + - GO:0005743 GO:0019866    
  mitochondrial respiratory chain + - GO:0005746 GO:0070469    
  cis-Golgi network + - GO:0005801     
  proteasome core complex + - GO:0005839     
  integral to membrane of membrane fraction + - GO:0000299     
  apical plasma membrane - + GO:0016324 GO:0045177    
  protein-DNA complex - + GO:0032993     
  cell-cell junction o + GO:0005911     
  lipid particle o + GO:0005811     
  microsome o + GO:0005792     
  vesicular fraction o + GO:0042598     
Biological Process antibiotic metabolism and biosynthesis + + GO:0016999 GO:0017000    
  drug metabolic process + + GO:0017144     
  metabolic processess (phenol, amino acids) + + GO:0006584 GO:0018958 GO:0006576 GO:0006575  
  response to alkaloid + + GO:0043279     
  (di) terpenoid metabolic process + o GO:0006721 GO:0016101    
  bone development, ossification + o GO:0060348 GO:0001503    
  vitamin A metabolic process + o GO:0006776 GO:0001523    
  drug transport + o GO:0015893     
  tissue remodeling + - GO:0048771     
  mitochondrion distribution, inheritance, organization + - GO:0048311 GO:0000001 GO:0048308 GO:0007005  
  autophagy + - GO:0006914     
  glyoxylate cycle + - GO:0006097 GO:0046487    
  metabolism of alditol, polyol, glycerol, aldehyde, process + - GO:0019751 GO:0006071 GO:0019400 GO:0006081  
  fat-soluble vitamin metabolic process + - GO:0006775     
  cellular aerobic respiration + - GO:0009060 GO:0045333    
  peripheral nervous system development + - GO:0007422 GO:0007411    
  (canalicular) bile acid and bile salt transport o + GO:0015721 GO:0015722    
  histidine meta- and catabolism o + GO:0006548 GO:0009075 GO:0006547 GO:0009077  
  monocarboxylic acid transport o + GO:0015718     
  response to purine, caffeine - + GO:0014074 GO:0031000    
  iron ion transport - + GO:0006826     
  olfactory chemosensory behavior - + GO:0042048 GO:0007635    
  acute inflammatory response - + GO:0002526     
  tRNA aminoacylation for protein translation - + GO:0006418 GO:0043039    
  cellular amino acid catabolic process, activation - + GO:0009063 GO:0043038 GO:0044270 GO:0009310  
  autophagic cell death - + GO:0048102     
Molecular Function N-(5-amino-5-carboxypentanoyl)-L-cysteinyl-D-valine synthase activity + + GO:0050564     
  amino-acid racemase activity + + GO:0047661     
  transition metal ion transmembrane transporter activity + + GO:0046915     
  ATPase activity + + GO:0043492 GO:0042626 GO:0015662 GO:0008553  
  L-ascorbic acid binding + + GO:0031418     
  phosphopantetheine binding + + GO:0031177     
  racemase and epimerase activity + + GO:0016854 GO:0016855    
  hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances + + GO:0016820     
  oxidoreductase activity + + GO:0016715     
  P-P-bond-hydrolysis-driven transmembrane transporter activity + + GO:0015405     
  primary active transmembrane transporter activity + + GO:0015399 GO:0015082 GO:0008514   
  copper ion binding + + GO:0005507     
  histone acetyltransferase activity + + GO:0004402     
  acyl carrier activity + + GO:0000036     
  binding: amine, chloride ion + o GO:0043176 GO:0043168 GO:0031404   
  ATPase activity + o GO:0042625     
  ligand-gated (ion) channel activity + o GO:0022834 GO:0015276    
  extracellular ligand-gated ion channel activity + o GO:0005230     
  retinol dehydrogenase activity + o GO:0004745     
  phosphoric diester hydrolase activity + - GO:0008081     
  threonine-type endopeptidase activity + - GO:0004298 GO:0070003    
  cation transmembrane transporter activity + - GO:0008324 GO:0015075    
  binding: tetrapyrrole heme, vitamin, oxygen o + GO:0020037 GO:0019842 GO:0019825 GO:0046906  
  oxidoreductase activity o + GO:0016712 GO:0016705    
  iron ion binding o + GO:0005506     
  monooxygenase activity o + GO:0004497 GO:0004500    
  oxidoreductase activity - + GO:0016709     
  endopeptidase (-inhibitor) activity - + GO:0004866 GO:0004857 GO:0004177 GO:0004867 GO:0030414
  nucleoside binding - + GO:0001882     
  aminoacyl-tRNA ligase activity - + GO:0004812     
Terms with the highest log2 odds ratios (>2; GOEAST analysis), or large difference in occurrence ratio between the two SSH libraries (> 2; CateGOrizer analysis) are included in the table. * Trend of expression; higher (+), lower (-) or equal (o), based on term countings (Hu et al 2008) in the cadmium, phenanthrene and normalized library.