Table 3 Identified cDNA sequences from Set 3 STACE experiments.

Full-length cDNA P.1

GTTAGGATCGTAGAGGACATG

II:8786920

II:8786297

II: 8787044

HQ451870

Overlaps F07H5.4 (pseudogene): evidence for extension to annotated exon

Partial cDNA P.2

AGAGGATTAATTCCCCCCATG

II:9375813

II:9376228

II:9375792

HQ451877

Overlaps with C06C3.10

Full-length cDNA P.3

GGGGGAAAATCGAAAGACATG

II:10201160

II: 10202155

II:10201084

HQ451871

Overlaps with tts-2 (ncRNA): evidence for new intron

Partial cDNA 1.1

GAAACGAAGAAGAAAAGCATG

V:19434698

V:19434352

V:19434718

HQ451878

Evidence of a novel gene

Full-length cDNA 1.2

TTCGACGGCAGATTGTTCATG

V:19432707

V:19433037

V:19432406

HQ451872

Overlaps with C25F9.11: evidence for new 5' UTR

Full-length 1.3

TAGCTCAGTCAAAACAACATG

V:5812559

V:5813070

V:5812296

HQ451873

Overlaps with ZC250.4: evidence for extension to 3' UTR

Partial cDNA 1.4a

AAAGTTGAGCTTCTGCTCATG

X:2346863

X:2335678

X:2346883

HQ451879

Overlaps with T01B6.1: evidence for new coding sequence

Partial cDNA 1.4b

AAAGTTGAGCTTCTGCTCATG

X:2346863

X:2345479

X:2346883

HQ451880

Overlaps with T01B6.1: evidence for new transcriptional start site

Partial cDNA 2.1a

TGGTTGTTAGTAGTGTACATG

II:15229391

II:15207408

II:15229412

HQ451881

Overlaps with Y46E12BL.4: evidence for new 3' UTR exon

Partial cDNA 2.1b

TGGTTGTTAGTAGTGTACATG

II:15229391

II:15216289

II:15229412

HQ451882

Overlaps with Y46E12BL.4: evidence for new initial coding exon

Full-length cDNA 2.2

CCATCTAAAGGGCTCTACA

IV:4415359

IV:44085996

IV:4415616

HQ451874

Overlaps with Y24D9A.1: evidence for extension to 3' UTR

Full-length cDNA 3.1

CTCATTGAAGGTGAAGCAT

X:14690913

X:14692920

X:14690763

HQ451875

Overlaps with sox-3: evidence for new 3' UTR

Partial cDNA 3.2

TGAAATGTCACAGTACACAT

III:7604002

III: 7601399

III:7604022

HQ451883

Evidence of a novel gene

Full-length cDNA 3.3

GAGAGAATTGTTGTGACCAT

X:4681136

X:4682689

X:4680952

HQ451876

Evidence of a novel gene