Transcient transfection experiement | |||
---|---|---|---|
Transcription factora | |||
OCT1 | 5' | GGTCTGTGGAAATACTGGCC TAATGGATCCTGAGGTTC | 3' |
CDX2 | 5' | GTGGACTGACAGCTTTTCGCC GTCACGTGACACAGTC | 3' |
USF | 5' | GCTTTTTATAGTCAAT TGACACAGTCAAAC | 3' |
HNF1 | 5' | CACAGTCAAACATGAG CTTGGTGTATCGA | 3' |
NF-Y | 5' | CTTGGTGTATCGACCT GTTTTTGCCATAT | 3' |
Electrophoretic mobility shift assays | |||
Putative TFs binding motif in UGT1A1 proximal promotera | |||
OCT1 | 5' | GTGGAAATACTAATT TAATGGA | 3' |
CDX2 | 5' | GACTGACAGCTTTTTA TAGTCA | 3' |
CREB/USF/SREBP1 | 5' | TTTTTATAGTCACGTG ACACAGTC | 3' |
HNF1 | 5' | CACAGTCAAACATTAAC TTG | 3' |
NF-Y | 5' | CTTGGTGTATCGATTGG TTTTTGCCAT | 3' |
PBX | 5' | TGTATCGATT GGTTTTTGCCATATAT | 3' |
Consensus oligonucleotide probes used in competition assaysa | |||
OCT1 consensus oligo | 5' | TGTCGAATGCAAATC ACTAGAA | 3' |
CDX2 consensus oligo | 5' | GTGCAATAAAACTTTA TGAGTA | 3' |
USF consensus oligo | 5' | CACCCGGTCACGTG GCCTACACC | 3' |
HNF1 consensus oligo | 5' | CCAGGTTAATGATTAAC CCA | 3' |
NF-Y consensus oligo | 5' | AGACCGTACGTGATTGG TTAATCTCTT | 3' |
PBX consensus oligo | 5' | CGAATTGATT GATGCACTAATTGCAG | 3' |
Oligonucleotide probes of the UGT1A1 promoter with CpG sitesb | |||
CpG-4/USF | 5' | AGCTTTTTATAGTCACG TGACACAGTCAAACAT | 3' |
CpG-4/USF-HNF1 | 5' | TCACG TGACACAGTCAAACATTAACTTGGT | 3' |
Reverse transcription (RT)-PCR | |||
Target gene | |||
HNF-1α Forward | 5' | GGTCATGAGCTTCGTCAACC | 3' |
HNF-1α Reverse | 5' | GCAGGAAGAGATCCGATTCC | 3' |
USF-1 Forward | 5' | GGCAGCTGAGACGGCCTTGG | 3' |
USF-1 Reverse | 5' | TGGCCCCCATTCTCAGTTCGGA | 3' |
USF-2 Forward | 5' | CTGCCTCTGTGCCCCCAGGT | 3' |
USF-2 Reverse | 5' | TTGTCCCTCCGCCTCCGCTC | 3' |
GAPDH Forward | 5' | TTGGTATCGTGGAAGGACTCA | 3' |
GAPDH Reverse | 5' | TGTCATCATATTTGGCAGGTTT | 3' |