From: Determination of reference genes for circadian studies in different tissues and mouse strains
Symbol | Primer | Sequence | Amplicon length | Primer location1 [exon] | Primer efficiency |
---|---|---|---|---|---|
Reference genes | Â | Â | Â | Â | |
Rplp0 | fw | CACTGGTCTAGGACCCGAGAAG | 73 | 4 | 1.98 |
 | rv | GGTGCCTCTGGAGATTTTCG |  | 4 |  |
Ppib | fw | GGAGATGGCACAGGAGGAAA | 73 | 3 | 1.93 |
 | rv | CCGTAGTGCTTCAGTTTGAAGTTCT |  | 4 |  |
Gapdh | fw | CCAATGTGTCCGTCGTGGATCT | 239 | 5 | 1.94 |
 | rv | GTTGAAGTCGCAGGAGACAACC |  | 6 |  |
Actb | fw | CTTCCTCCCTGGAGAAGAGC | 124 | 4 | 1.98 |
 | rv | ATGCCACAGGATTCCATACC |  | 5 |  |
Hmbs | fw | TCCCTGAAGGATGTGCCTA | 73 | 7 | 1.64 |
 | rv | AAGGGTTTTCCCGTTTGC |  | 8 |  |
Hprt1 | fw | TCCTCCTCAGACCGCTTTT | 90 | 1 | 1.89 |
 | rv | CCTGGTTCATCATCGCTAATC |  | 2 |  |
Rn18s | fw | CGCCGCTAGAGGTGAAATTC | 62 | n.a. | 1.79 |
 | rv | TTGGCAAATGCTTTCGCTC |  | n.a. |  |
Eif2a | fw | CAACGTGGCAGCCTTACA | 74 | 2 | 1.95 |
 | rv | TTTCATGTCATAAAGTTGTAGGTTAGG |  | 3 |  |
Utp6c | fw | TTTCGGTTGAGTTTTTCAGGA | 75 | 17 | 1.82 |
 | rv | CCCTCAGGTTTACCATCTTGC |  | 18 |  |
Tbcc | fw | GACTCCTTCCTGAACCTCTGG | 62 | n.a. | 1.90 |
 | rv | GGAGGCCATTCAAAACTTCA |  | n.a. |  |
Circadian gene | Â | Â | Â | Â | |
Dbp | fw | AATGACCTTTGAACCTGATCCCGCT | 175 | 7 | 1.93 |
 | rv | GCTCCAGTACTTCTCATCCTTCTGT |  | 7 |  |