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Table 3 Twelve different spliced leader sequences in A. avenae mRNAs.

From: Expression profiling and cross-species RNA interference (RNAi) of desiccation-induced transcripts in the anhydrobiotic nematode Aphelenchus avenae

SL name

SL sequence

EST accession no.

SL1a

GGTTTATATACCCAAGTTTGAG

EF026240, GR463910, GR463914, GR463901

SL1b

GGTTTTATTACCCAAGTTTGAG

GR463903

SL1c

GGTTTAAATACCCAAATTTGAG

EF026241, GR463900

SL1d

GGTTTAAATACCCTAATTTGAG

GR463894

Variant 1

GGTTTAAATACCCTTTATTGAG

GR463919

Variant 2

GGTTTATACACCCAAGTTTGAG

GR463909

Variant 3

GGTTTTATTACCCCAGTTTGAG

GR463912

Variant 4

GGTTTAAATACCCGAATTTGAG

EF026246

Variant 5

GGTTTACACCCAGTATCACAAG

GR463907

Variant 6

GGTTTAATACCCAGTATCACAAG

GR463905, GR463906

Variant 7

GGTTTAAAACCCAGTATCACAAG

GR463915

Variant 8

-GTTTTTACAGAAAACCACAAG

GR463918

SL1 [C. elegans]

GGTTTAATTACCCAAGTTTGAG

 

SL2 [C. elegans]

GGTTTTAACCCAGTTACTCAAG

 
  1. SL1a to SL1d are described in ref. [13]. The two canonical spliced leader sequences from C. elegans are listed for comparison. In cases where A. avenae ESTs are not listed, the respective cDNAs are incomplete at the 5' end and cannot be assessed for spliced leader use.