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Table 1 ESTs, with similarity to known sequences, identified by enrichment for dehydration-induced gene expression in A. avenae.

From: Expression profiling and cross-species RNA interference (RNAi) of desiccation-induced transcripts in the anhydrobiotic nematode Aphelenchus avenae

Relative Expression

Accession no.

Closest BLAST hit (organism)a

Homologue accession no.

BLAST score

Desiccation

Osmotic

Heat

Cold

EF026241

LEA protein (Caenorhabditis elegans)

NM_001028871

0.001

42.6

24.1

3.1

7.9

EF026240

*LEA-like hypothetical protein (C. elegans)

AF016513

0.002

35.9

21.8

2.8

47.2

GR463894

C-type lectin (clec-49) (C. elegans)

NM_075428

2E-12

1.7

0.7

1.3

1.1

EF026242

*C-type lectin (clec-202) (C. elegans)

NM_070694

2E-09

1.3

2.4

1.5

1.9

GR463895

polygalacturonase (Aspergillus clavatus)

XM_001272238

5E-51

2.7

47.9

0.9

7.2

GR463896

polygalacturonase (Penicillium griseorseum)

AF195791

1E-129

3.0

2.1

0.7

3.2

GR463897

AHA-1, activator of Hsp90 (Bombyx mori) myo-inositol-1-phosphate synthase (C. elegans)

XM_001901615

2E-17

27.2

19.3

1.7

4.3

GR463898

 

NM_064098

8E-68

1.3

1.3

0.9

1.6

GR463899

GABA/glycine receptor (ggr-3) (C. elegans)

NM_062550

5E-42

1.2

15.3

1.6

0.8

GR463900

hypothetical protein Y53G8B.4 (C. elegans) C2H2-type zinc finger protein (Brugia malayi)

NM_001047419

3E-16

4.4

12.5

4.5

6.2

GR463901

 

XM_001900365

1E-104

2.6

5.2

2.7

3.5

GR463902

*MSFI-like/14-3-3 protein (C. elegans)

NM_060551

1E-65

2.6

2.5

1.0

2.0

DR121003

vesicle transport (unc-16) (C. elegans)

NM_001027810

2E-09

2.4

1.7

1.2

1.6

GR463903

DJ-1 like (Tribolium castaneum)

XM_968208

4E-37

10.2

6.3

2.0

3.6

GR463904

*saposin (spp-3) (C. elegans)

NM_076834

4E-05

1.8

2.0

1.8

3.0

GR463905

Sm-like protein (lsm-5) (C. elegans)

NM_074469

1E-42

4.3

2.9

1.0

2.9

GR463906

dual specificity phosphatase F28C6.8 (C. elegans)

NM_063425

3E-28

2.8

2.3

1.3

2.7

GR463907

Appr-1-p processing enzyme (B. malayi)

XM_001901533

5E-21

1.3

3.1

1.7

1.9

GR463908

hypothetical protein F42A10.7 (C. elegans)

NM_065940

1E-41

1.8

1.7

1.3

2.6

GR463909

aspartate protease inhibitor (Onchocercavolvulus)

X13313

4E-35

2.5

4.9

2.7

8.2

GR463910

GATA-type zinc finger protein (B. malayi)

XM_001892676

6E-14

2.6

1.9

1.4

2.0

GR463911

tropomyosin (Heterodera glycines)

AF546757

1E-99

1.6

1.7

1.9

2.5

GR463912

transthyretin-related (Radopholus similis)

AM691117

2E-36

4.3

2.9

0.7

5.6

GR463913

collagen family (col-14) (C. elegans)

NM_001047459

1E-39

1.4

1.4

1.3

2.6

GR463914

glutathione peroxidase (Globodera rostochiensis)

AJ493678

3E-56

31.9

14.3

1.6

7.6

GR463915

high mobility group protein (hmg1.1) (C. elegans)

XM_001893327

3E-35

4.0

10.2

4.4

13.4

DR121009

zinc/RING finger protein (mnat-1) (C. elegans)

NM_061879

3E-14

1.4

2.3

1.1

1.5

GR463916

Predicted ion channel (ced-11) (C. elegans)

AJ272503

2E-06

1.1

17.6

2.1

0.7

GR463917

rhoGAP domain (B. malayi)

XM_001894857

6E-36

2.2

1.5

1.4

0.8

GR463918

hypothetical protein ZK228.3 (C. elegans)

Z82086.1

4E-04

1.2

2.0

1.4

2.0

  1. Where accession numbers are shown in bold, respective sequences were used in cross-species RNAi experiments with P. superbus. aClosest homologue in the GenBank database using the TBLASTX tool http://www.ncbi.nlm.nih.gov/blast; where indicated by an asterix, BLASTX against the C. elegans genome was used instead http://www.wormbase.org/db/searches/blast_blat. Relative expression following exposure of nematodes to four environmental stresses is shown at right of Table. Values in regular type represent a statistically significant upregulation in gene expression with respect to A. avenae 5.8S rRNA and ama-1 genes; values in grey font are not significant.
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BMC Molecular Biology

ISSN: 1471-2199

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