Table 2 Number of amino acids in the randomized part of the sequences (Table 1), analyzed according to the chemical used in selection.
From: A method for selecting cis-acting regulatory sequences that respond to small molecule effectors
erythromycin | chloramphenicol | troleandomycin | meta-toluate | HSL | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
Amino acid | Total number | Sequences | Total number | Sequences | Total number | Sequences | Total number | Sequences | Total number | Sequences |
A | 3 | 3 | 4 | 4 | 5 | 3 | 5 | 4 | 7 | 6 |
C | 1 | 1 | 5 | 4 | 3 | 3 | 2 | 2 | 3 | 3 |
D | 1 | 1 | 2 | 2 | 1 | 1 | 2 | 2 | 6 | 5 |
E | - | - | 4 | 4 | 5 | 5 | 1 | 1 | 1 | 1 |
F | 3 | 3 | 5 | 4 | 3 | 3 | 3 | 2 | 4 | 3 |
G | 9 | 5 | 10 | 7 | 7 | 3 | 5 | 4 | 3 | 3 |
H | 3 | 3 | - | - | 2 | 2 | 1 | 1 | 1 | 1 |
I | 6 | 5 | 2 | 2 | 5 | 4 | 4 | 4 | 4 | 3 |
K | - | - | 2 | 1 | - | - | 5 | 5 | 3 | 2 |
L | 13 | 8 | 1 | 1 | 5 | 3 | 8 | 6 | 9 | 7 |
M | - | - | 1 | 1 | 3 | 3 | 1 | 1 | 1 | 1 |
N | 3 | 3 | 2 | 2 | 1 | 1 | - | - | 2 | 2 |
P | - | - | 3 | 2 | 1 | 1 | - | - | 6 | 6 |
Q | - | - | 2 | 2 | 1 | 1 | 1 | 1 | - | - |
R | 5 | 5 | 7 | 4 | 13 | 8 | 6 | 5 | 3 | 2 |
S | 10 | 7 | 6 | 5 | 9 | 9 | 6 | 4 | 4 | 4 |
T | 1 | 1 | 3 | 3 | - | - | 3 | 2 | 1 | 1 |
V | 8 | 7 | 8 | 6 | 4 | 3 | 6 | 3 | 10 | 6 |
W | 2 | 2 | 1 | 1 | 1 | 1 | 5 | 3 | - | - |
Y | 2 | 2 | 2 | 2 | 1 | 1 | 6 | 4 | 2 | 2 |