Primers | Â | Â | Â |
---|---|---|---|
Assay | Primer | Position | Sequence |
RACE | 5'RACE nested | 48852556 | CCTCTCACAGCTCATGTCTGAT |
RACE | 5'RACE | 48852500 | ACCACATCCAGGCACTGTTCTTC |
RACE | 3'RACE | 48852519 | GAACAGTGCCTGGATGTGGTGAC |
PCR/Real-time | uPAR Fwd E1 | 48866085 | CTGCTGCTGCTCCACACCT |
PCR/Real-time | uPAR Rev E7 | 48845002 | TGGGTGGTTACAGCCACTTT |
PCR/Real-time | uPAR Rev E7b | 48842344 | ATCACATCTGCTGGGGCTAC |
PCR/Real-time | uPAR Rev E2 | 48863624 | ACTCTTCCACACGGCAATCCC |
PCR/Real-time | uPAR Rev E7b (long UTR) | 48842223 | GCCTGTCCTTCCATGATGTT |
Probes | Â | Â | Â |
Assay | TaqMan Probe | Location | Sequence ('denotes exon boundary) |
Real-time PCR | Exon 1–2 | Exon1–2 | CCAGCCTCTTGGGGCCTGCGGT |
Real-time PCR | Exon 5 del | Exon4–6 | AGCTCCAGGA'CTTCTTCACCTTCC |
Real-time PCR | Exon 3 del | Exon 2–4 | CAGCCCGGC'CTTCCCACAAGCG |
Real-time PCR | Exon 6 del +E7 | Exon 5–7 | TTCGGTT'TTGGGCCCTCGTTGCAT |
Real-time PCR | Exon 6 del +E7b | Exon 5–7b | TTCCCCAGAGTGAGCGTT'TTGGGC |
Real-time PCR | Exon 5+6 del +E7 | Exon 4–7 | TCCAGGAAGGTGAAGAAG'AACCGAAA |
Real-time PCR | Exon 5+6 del; E7b | Exon 4–7b | CCCAGAGTGAGCGTT'CTTCTTCACC |
Real-time PCR | Exon 4+5 del | Exon 3–6 | TGCAACCAGGGCAACTCTG'TCCT |