Table 1 Mouse CPM locus transcripts defined by bioinformatics analysis
From: Multiple RNAs from the mouse carboxypeptidase M locus: functional RNAs or transcription noise?
Number of supporting sequences | CPC | |||||||
|---|---|---|---|---|---|---|---|---|
Transcript | DNA strand | Total | Unique cDNA | Spliced cDNA | CAGE | Size (bp) | coding potential | score |
01 | Sense | 53# | 31 | 52 | 3¥ | 5195 | Strong | 6.01 |
02 | Sense | 9 | 3 | 3 | 3¥ | 798 | Weak | 0.48 |
03 | Sense | 2 | 2 | 0 | 0 | 391 | No | -1.28 |
04 | Sense | 7 | 0 | ? | 7 | ? | ? | ? |
05 | Sense | 2 | 2 | 0 | 0 | 408 | No | -1.09 |
06 * | Sense | 6 | 0 | 3 | 3 | 652 | Strong | 3.70 |
07 | Sense | 4 | 4 | 0 | 0 | 1900 | Weak | 0.37 |
08 * | Sense | 5 | 0 | 2 | 3 | 1014 | Strong | 3.52 |
09 | Sense | 2 | 2 | 0 | 0 | 548 | No | -1.05 |
10 | Sense | 7 | 3 | 7 | 0 | 2007 | Strong | 1.73 |
11 | Sense | 4 | 4 | 0 | 0 | 1125 | No | -1.15 |
12 | Sense | 1 | 0 | ? | 1 | ? | ? | ? |
13 | Sense | 2 | 0 | ? | 2 | ? | ? | ? |
14 | Sense | 1 | 0 | ? | 1 | ? | ? | ? |
15 | Sense | 1 | 0 | ? | 1 | ? | ? | ? |
16 * | Sense | 2 | 0 | 1 | 1 | 502 | Strong | 2.68 |
17 | Sense | 2 | 0 | ? | 2 | ? | ? | ? |
18 | Sense | 1 | 1 | 0 | 0 | 332 | No | -1.35 |
19 | Sense | 1 | 0 | ? | 1 | ? | ? | ? |
20 * | Sense | 4 | 0 | 4 | 0 | 890 | Strong | 2.79 |
21 * | Sense | 2 | 0 | 2 | 0 | 547 | Strong | 1.84 |
22 * | Sense | 1 | 0 | ? | 1 | ? | ? | ? |
23 * | Sense | 1 | 0 | ? | 1 | ? | ? | ? |
24 * | Sense | 2 | 0 | ? | 2 | ? | ? | ? |
25 * | Sense | 1 | 0 | ? | 1 | ? | ? | ? |
26 * | Anti-sense | 1 | 0 | ? | 1 | ? | ? | ? |
27 | Anti-sense | 1 | 1 | 0 | 0 | 492 | Weak | 0.02 |
28 | Anti-sense | 1 | 1 | 0 | 0 | 468 | No | -1.11 |
29 | Anti-sense | 1 | 0 | ? | 1 | ? | ? | ? |
30 | Anti-sense | 1 | 0 | ? | 1 | ? | ? | ? |
31 | Anti-sense | 4 | 0 | ? | 4 | ? | ? | ? |
32 | Anti-sense | 1 | 1 | 0 | 0 | 662 | No | -1.27 |
33 | Anti-sense | 1 | 0 | ? | 1 | ? | ? | ? |
34 | Anti-sense | 1 | 1 | 0 | 0 | 668 | No | -1.28 |
Undefined & | Both | 124 | 124 | 0 | 5 | N/A | N/A | N/A |