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Table 1 Mouse CPM locus transcripts defined by bioinformatics analysis

From: Multiple RNAs from the mouse carboxypeptidase M locus: functional RNAs or transcription noise?

   Number of supporting sequences   CPC
Transcript DNA strand Total Unique cDNA Spliced cDNA CAGE Size (bp) coding potential score
01 Sense 53# 31 52 3¥ 5195 Strong 6.01
02 Sense 9 3 3 3¥ 798 Weak 0.48
03 Sense 2 2 0 0 391 No -1.28
04 Sense 7 0 ? 7 ? ? ?
05 Sense 2 2 0 0 408 No -1.09
06 * Sense 6 0 3 3 652 Strong 3.70
07 Sense 4 4 0 0 1900 Weak 0.37
08 * Sense 5 0 2 3 1014 Strong 3.52
09 Sense 2 2 0 0 548 No -1.05
10 Sense 7 3 7 0 2007 Strong 1.73
11 Sense 4 4 0 0 1125 No -1.15
12 Sense 1 0 ? 1 ? ? ?
13 Sense 2 0 ? 2 ? ? ?
14 Sense 1 0 ? 1 ? ? ?
15 Sense 1 0 ? 1 ? ? ?
16 * Sense 2 0 1 1 502 Strong 2.68
17 Sense 2 0 ? 2 ? ? ?
18 Sense 1 1 0 0 332 No -1.35
19 Sense 1 0 ? 1 ? ? ?
20 * Sense 4 0 4 0 890 Strong 2.79
21 * Sense 2 0 2 0 547 Strong 1.84
22 * Sense 1 0 ? 1 ? ? ?
23 * Sense 1 0 ? 1 ? ? ?
24 * Sense 2 0 ? 2 ? ? ?
25 * Sense 1 0 ? 1 ? ? ?
26 * Anti-sense 1 0 ? 1 ? ? ?
27 Anti-sense 1 1 0 0 492 Weak 0.02
28 Anti-sense 1 1 0 0 468 No -1.11
29 Anti-sense 1 0 ? 1 ? ? ?
30 Anti-sense 1 0 ? 1 ? ? ?
31 Anti-sense 4 0 ? 4 ? ? ?
32 Anti-sense 1 1 0 0 662 No -1.27
33 Anti-sense 1 0 ? 1 ? ? ?
34 Anti-sense 1 1 0 0 668 No -1.28
Undefined & Both 124 124 0 5 N/A N/A N/A
  1. * Transcripts totally included in the mCPM-T01.
  2. &Non-spliced cDNAs that map in the last exon of mouse CPM gene and probably represent independent transcripts.
  3. #Not including the cDNAs that map to the last exon.
  4. ¥ Can be supportive of mCPM-T01 or mCPM-T02.
  5. ? = Not enough information to conclude. N/A = not applicable.