From: Breeding response of transcript profiling in developing seeds of Brassica napus
Categry | Accession number | Gene name | Gene annotation | Primer sequence | Amplicon size(bp) | PCR efficency |
---|---|---|---|---|---|---|
ACCase | X77382 | ACCase | Homomeric acetyl CoA carboxylase | F:5'AGGACTTGCCAATCTTCTAAAC3' | 157 | 0.973 |
 |  |  |  | R:5'AGCTTCTTTCACCGTAGGACAC3' |  |  |
 | AY538675 | α-CT | alpha-carboxyltransferase | F:5'CTTGTCCACCCTATTCTGATTG3' | 106 | 0.958 |
 |  |  |  | R:5'ATGTCCAGCTTAGATTTGAGGC3' |  |  |
 | Z50868 | β-CT | Beta-carboxyltransferase | F:5'CAGCAAGTTTGGGTATGTTGGG 3' | 116 | 1.030 |
 |  |  |  | R:5'GTGAACCTTCAGGCACGGCTTT3' |  |  |
 | AY034410 | BC | Biotin carboxylase | F:5'AGGACCCATTCAAAGGATTCAG3' | 118 | 1.000 |
 |  |  |  | R:5'GCTTGGAGGAACAACATAGTCG3' |  |  |
Desaturase | AY642537 | SAD | Stearoyl-ACP desaturase | F:5'GTTTACACTGCCAAAGACTATGCG3' | 135 | 0.937 |
 |  |  |  | R:5'CCTGATTCTCGGAGTCAACCCAC3' |  |  |
 | AY592975 | FAD2 | Oleate desaturase | F:5'AGGCGATAAAGCCGATACTTGG3' | 107 | 1.095 |
 |  |  |  | R:5'CCTATCCGGTTCAACATAGATACACT3' |  |  |
 | AY599884 | FAD3 | Linoleate desaturase | F:5'TTCCCACAAATCCCTCACTATCA3' | 132 | 0.936 |
 |  |  |  | R:5'ACTTGCCACCAAACTTTCCACC3' |  |  |
 | AY642535 | FAD6 | Oleate desaturase | F:5'ATCACATAAGCCCAAGGATACCG3' | 116 | 0.953 |
 |  |  |  | R:5'TCGTCTTCATCAACCGCCAATT3' |  |  |
Elongase | AJ007046 | MCAT | Malonyl CoA-acyl carrier protein transacylase | F:5'ATCATAGGGTTGGACTCAGAAA 3' | 116 | 0.955 |
 |  |  |  | R:5'ACTGCGTAGTTACCCGGACATA 3' |  |  |
 | AF244519 | KAS1 | Beta-ketoacyl-ACP synthase 1 | F:5'ACACGGTCGCAAACGAGAAGAA3' | 204 | 0.976 |
 |  |  |  | R:5'GAAGATAATGGTGATGGAGCAG3' |  |  |
 | AF244520 | KAS2 | Beta-ketoacyl-ACP synthase 2 | F:5'GGAGTACCAAGCCCTTGCTCAC3' | 133 | 0.812 |
 |  |  |  | R:5'TCCTTATGGCCTGCACAGTTGC3' |  |  |
 | AF179854 | KAS3 | Beta-ketoacyl-ACP synthase 3 | F:5'GGATGATGGGTTATTTAGTTTC3' | 108 | 0.918 |
 |  |  |  | R:5'CCAAAGGGTAAAGCAGGAGAAG3' |  |  |
 | AF009563 | FAE1 | Fatty acid elongase 1 | F:5'GTCAGGCTTTAAGTGTAACAGTGCA3' | 159 | 0.957 |
 |  |  |  | R:5'TTATTAGGACCGACCGTTTTGG3' |  |  |
 | AF382146 | KACD | 3-keto-acyl-acp dehydratase | F:5'GATAGCGAAAATGGAAGGGAAAG3' | 115 | 0.958 |
 |  |  |  | R:5'AAAGCAAAAGGCACGAGAACATA3' |  |  |
 | AY196197 | KCR2 | 3-ketoacyl-CoA reductase | F:5'TGAGTACAAGAAAAGTGGGATTG3' | 101 | 0.983 |
 |  |  |  | R:5'GAGATGCCACTAAGAAAGATGCT3' |  |  |
Thioesterase | BRU17098 | FatA | Acyl-ACP thioesterase | F:5'GGGACCAATGGCTCTGCATCAT3' | 121 | 0.965 |
 |  |  |  | R:5'GGCTTCTTTCTCCACAGGGTTG3' |  |  |
 | DQ847275 | FatB | Palmitoyl-ACP thioesterase | F:5'AGTTTGTGGGTGATGATGAATA3' | 107 | 0.944 |
 |  |  |  | R:5'GCAAGGATAGGGTCAGAGTTCA3' |  |  |
TAG synthesis | AF155224 | DGAT2 | Acyl-CoA: diacylglycerol acyltransferase | F:5'CATGACCTGATGAACCGCAAAG3' | 111 | 0.985 |
 |  |  |  | R:5'ACGGCTACCAAAAGGATACAAAA3' |  |  |
 | AF111161 | LPAAT | Plastidial lysophosphatidic acid acyltransferase | F:5' CGAAGAGGCGAGAAACAAGATAG3' | 100 | 0.970 |
 |  |  |  | R:5'TGGTTTAGCCTTCTCATTGTTCA3' |  |  |
 | AY179560 | AAPT1 | Aminoalcoholphosphotransferase | F:5'TGGTGCTTCTTGGTTATTGTAT3' | 156 | 0.821 |
 |  |  |  | F:5'GACCCTCGATGGTGAGTTTGA3' |  |  |
Oil body protein | AY570250 | Napin | 1.7S oil body protein | R:5'CTTTGGATGCTCCTTTCAAGGT3' | 148 | 0.958 |
 |  |  |  | F:5'GTAATCAATTTGGCCCTTAGCT3' |  |  |
 | AY966447 | Caleosin | Ca2+-binding oil body surface protein | R:5'CTCAAGATTCACAGGCATAAAC3' | 116 | 0.952 |
 |  |  |  | F:5'CTGGGAGGCAAAGTTCAGGATA3' |  |  |
 | X58000 | Oleosin | oil body associated protein | R:5'CATGGCGTAATTTAGGTAGTGT3' | 122 | 0.969 |
 |  |  |  | F:5'GAGGAGTCAGAGACCGCAGGA3' |  |  |
 | M16860 | Cruciferin | 12S neutral oil bodyprotein | R:5'AAGGAAGCGAAGGATGGGGAGA3' | 165 | 0.969 |
 |  |  |  | R:5'GGATTTGCATTATCCTCCCTTG3' |  |  |
Housekeep genes | AF111812 | β-actin | Housekeeping gene | F:5'CTGGAATTGCTGACCGTATGAG 3' | 145 | 1.001 |
 |  |  |  | R:5'ATCTGTTGGAAAGTGCTGAGGG 3' |  |  |
 | DQ097338 | GAPDH | Glyceraldehyde-3-phosphate dehydrogenase | F:5'GCTATCAAGGAGGAATCTGAGGAC3' | 146 | 0.936 |
 |  |  |  | R:5'CTTCACGAAATTGTCACTCAACG3' |  |  |
Others | DQ167182 | P 450 | Cytochrome P450 | F:5'ATGGATCTCGGGATCGGACAGT3' | 156 | 0.954 |
 |  |  |  | R:5'GTCAAGCGATGACGGAGCAAAA3' |  |  |
 | X93015 | GKTP | Glyoxysomal beta-ketoacyl-thiolase precursor | F:5'GTTGGTCCAGCAGTTGCCATTC3' | 159 | 0.934 |
 |  |  |  | R:5'CGCCTCCGTTGACATTGATTTT3' |  |  |
 | AJ223497 | PEPC | Phosphoenolpyruvate carboxylase | F:5'GGTTGGGTTTATTGGTTTGTTTATG3' | 134 | 0.934 |
 |  |  |  | R:5'ATTCCCTTGCTCGGTTTTGTTA3' |  |  |
 | AJ271162 | AGPase | ADP-glucose pyrophosphorylase small subunit | F:5'AGACACCACCACCCCGTTTGAC3' | 129 | 0.974 |
 |  |  |  | R:5' TTTAGGGATAAGGCAGGAGGAT3' |  |  |
 | AB041622 | BcRK6 | Receptor kinase 6 | F:5'AGGTTAAGTGACGGGCAAGAAA3' | 143 | 1.019 |
 |  |  |  | R:5'TTGAACGCAACAGCCAAGAAGT3' |  |  |
 | AY065839 | SUC1 | Sucrose transporter | F:5'GCCAAGGACTGTCGTTAGGAGTTT3' | 133 | 0.970 |
 |  |  |  | R:5'TGCGATTGCTCCGACTATAAATG3' |  |  |