Skip to main content

Table 4 Primer pairs and amplicon sizes of the genes analyzed in this study.

From: Breeding response of transcript profiling in developing seeds of Brassica napus

Categry

Accession number

Gene name

Gene annotation

Primer sequence

Amplicon size(bp)

PCR efficency

ACCase

X77382

ACCase

Homomeric acetyl CoA carboxylase

F:5'AGGACTTGCCAATCTTCTAAAC3'

157

0.973

    

R:5'AGCTTCTTTCACCGTAGGACAC3'

  
 

AY538675

α-CT

alpha-carboxyltransferase

F:5'CTTGTCCACCCTATTCTGATTG3'

106

0.958

    

R:5'ATGTCCAGCTTAGATTTGAGGC3'

  
 

Z50868

β-CT

Beta-carboxyltransferase

F:5'CAGCAAGTTTGGGTATGTTGGG 3'

116

1.030

    

R:5'GTGAACCTTCAGGCACGGCTTT3'

  
 

AY034410

BC

Biotin carboxylase

F:5'AGGACCCATTCAAAGGATTCAG3'

118

1.000

    

R:5'GCTTGGAGGAACAACATAGTCG3'

  

Desaturase

AY642537

SAD

Stearoyl-ACP desaturase

F:5'GTTTACACTGCCAAAGACTATGCG3'

135

0.937

    

R:5'CCTGATTCTCGGAGTCAACCCAC3'

  
 

AY592975

FAD2

Oleate desaturase

F:5'AGGCGATAAAGCCGATACTTGG3'

107

1.095

    

R:5'CCTATCCGGTTCAACATAGATACACT3'

  
 

AY599884

FAD3

Linoleate desaturase

F:5'TTCCCACAAATCCCTCACTATCA3'

132

0.936

    

R:5'ACTTGCCACCAAACTTTCCACC3'

  
 

AY642535

FAD6

Oleate desaturase

F:5'ATCACATAAGCCCAAGGATACCG3'

116

0.953

    

R:5'TCGTCTTCATCAACCGCCAATT3'

  

Elongase

AJ007046

MCAT

Malonyl CoA-acyl carrier protein transacylase

F:5'ATCATAGGGTTGGACTCAGAAA 3'

116

0.955

    

R:5'ACTGCGTAGTTACCCGGACATA 3'

  
 

AF244519

KAS1

Beta-ketoacyl-ACP synthase 1

F:5'ACACGGTCGCAAACGAGAAGAA3'

204

0.976

    

R:5'GAAGATAATGGTGATGGAGCAG3'

  
 

AF244520

KAS2

Beta-ketoacyl-ACP synthase 2

F:5'GGAGTACCAAGCCCTTGCTCAC3'

133

0.812

    

R:5'TCCTTATGGCCTGCACAGTTGC3'

  
 

AF179854

KAS3

Beta-ketoacyl-ACP synthase 3

F:5'GGATGATGGGTTATTTAGTTTC3'

108

0.918

    

R:5'CCAAAGGGTAAAGCAGGAGAAG3'

  
 

AF009563

FAE1

Fatty acid elongase 1

F:5'GTCAGGCTTTAAGTGTAACAGTGCA3'

159

0.957

    

R:5'TTATTAGGACCGACCGTTTTGG3'

  
 

AF382146

KACD

3-keto-acyl-acp dehydratase

F:5'GATAGCGAAAATGGAAGGGAAAG3'

115

0.958

    

R:5'AAAGCAAAAGGCACGAGAACATA3'

  
 

AY196197

KCR2

3-ketoacyl-CoA reductase

F:5'TGAGTACAAGAAAAGTGGGATTG3'

101

0.983

    

R:5'GAGATGCCACTAAGAAAGATGCT3'

  

Thioesterase

BRU17098

FatA

Acyl-ACP thioesterase

F:5'GGGACCAATGGCTCTGCATCAT3'

121

0.965

    

R:5'GGCTTCTTTCTCCACAGGGTTG3'

  
 

DQ847275

FatB

Palmitoyl-ACP thioesterase

F:5'AGTTTGTGGGTGATGATGAATA3'

107

0.944

    

R:5'GCAAGGATAGGGTCAGAGTTCA3'

  

TAG synthesis

AF155224

DGAT2

Acyl-CoA: diacylglycerol acyltransferase

F:5'CATGACCTGATGAACCGCAAAG3'

111

0.985

    

R:5'ACGGCTACCAAAAGGATACAAAA3'

  
 

AF111161

LPAAT

Plastidial lysophosphatidic acid acyltransferase

F:5' CGAAGAGGCGAGAAACAAGATAG3'

100

0.970

    

R:5'TGGTTTAGCCTTCTCATTGTTCA3'

  
 

AY179560

AAPT1

Aminoalcoholphosphotransferase

F:5'TGGTGCTTCTTGGTTATTGTAT3'

156

0.821

    

F:5'GACCCTCGATGGTGAGTTTGA3'

  

Oil body protein

AY570250

Napin

1.7S oil body protein

R:5'CTTTGGATGCTCCTTTCAAGGT3'

148

0.958

    

F:5'GTAATCAATTTGGCCCTTAGCT3'

  
 

AY966447

Caleosin

Ca2+-binding oil body surface protein

R:5'CTCAAGATTCACAGGCATAAAC3'

116

0.952

    

F:5'CTGGGAGGCAAAGTTCAGGATA3'

  
 

X58000

Oleosin

oil body associated protein

R:5'CATGGCGTAATTTAGGTAGTGT3'

122

0.969

    

F:5'GAGGAGTCAGAGACCGCAGGA3'

  
 

M16860

Cruciferin

12S neutral oil bodyprotein

R:5'AAGGAAGCGAAGGATGGGGAGA3'

165

0.969

    

R:5'GGATTTGCATTATCCTCCCTTG3'

  

Housekeep genes

AF111812

β-actin

Housekeeping gene

F:5'CTGGAATTGCTGACCGTATGAG 3'

145

1.001

    

R:5'ATCTGTTGGAAAGTGCTGAGGG 3'

  
 

DQ097338

GAPDH

Glyceraldehyde-3-phosphate dehydrogenase

F:5'GCTATCAAGGAGGAATCTGAGGAC3'

146

0.936

    

R:5'CTTCACGAAATTGTCACTCAACG3'

  

Others

DQ167182

P 450

Cytochrome P450

F:5'ATGGATCTCGGGATCGGACAGT3'

156

0.954

    

R:5'GTCAAGCGATGACGGAGCAAAA3'

  
 

X93015

GKTP

Glyoxysomal beta-ketoacyl-thiolase precursor

F:5'GTTGGTCCAGCAGTTGCCATTC3'

159

0.934

    

R:5'CGCCTCCGTTGACATTGATTTT3'

  
 

AJ223497

PEPC

Phosphoenolpyruvate carboxylase

F:5'GGTTGGGTTTATTGGTTTGTTTATG3'

134

0.934

    

R:5'ATTCCCTTGCTCGGTTTTGTTA3'

  
 

AJ271162

AGPase

ADP-glucose pyrophosphorylase small subunit

F:5'AGACACCACCACCCCGTTTGAC3'

129

0.974

    

R:5' TTTAGGGATAAGGCAGGAGGAT3'

  
 

AB041622

BcRK6

Receptor kinase 6

F:5'AGGTTAAGTGACGGGCAAGAAA3'

143

1.019

    

R:5'TTGAACGCAACAGCCAAGAAGT3'

  
 

AY065839

SUC1

Sucrose transporter

F:5'GCCAAGGACTGTCGTTAGGAGTTT3'

133

0.970

    

R:5'TGCGATTGCTCCGACTATAAATG3'

 Â