Table 2 Characterization of transcript profiles in developing seeds of B. napus.
From: Breeding response of transcript profiling in developing seeds of Brassica napus
Rank | Gene name | Mean transcript level (TL) | Ratio of Mean TL | Relative transcript level (RTL)(%) | Coefficient of variation (%) | Peak value | Day of peak(DAP) | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Â | Â | ZS9 | ZY821 | ZS9/ZY821 | ZS9 | ZY821 | ZS9 | ZY821 | ZS9 | ZY821 | ZS9 | ZY821 |
1 | Napin | 46.92 | 50.22 | 0.93 | 76.89 | 75.41 | 156.10 | 140.02 | 178.46 | 172.97 | 35.00 | 45.00 |
2 | Oleosin | 3.91 | 5.47 | 0.71 | 6.40 | 8.21 | 133.12 | 167.69 | 13.50 | 23.93 | 40.00 | 40.00 |
3 | β-CT | 2.98 | 4.68 | 0.64 | 4.89 | 7.03 | 112.91 | 79.70 | 10.32 | 11.50 | 15.00 | 15.00 |
4 | Caleosin | 1.43 | 0.89 | 1.60 | 2.34 | 1.34 | 138.14 | 134.30 | 5.09 | 3.10 | 40.00 | 40.00 |
5 | FAE1 | 1.09 | 0.60 | 1.80 | 1.78 | 0.91 | 103.81 | 110.91 | 3.30 | 2.06 | 30.00 | 40.00 |
6 | β-Actin | 1.00 | 1.00 | 1.00 | 1.64 | 1.50 | 40.57 | 46.89 | 1.69 | 1.56 | 45.00 | 40.00 |
7 | Cruciferin | 0.99 | 1.17 | 0.85 | 1.62 | 1.76 | 172.95 | 147.58 | 4.99 | 4.30 | 40.00 | 45.00 |
8 | SAD | 0.45 | 0.53 | 0.84 | 0.74 | 0.80 | 97.89 | 95.50 | 1.35 | 1.71 | 25.00 | 25.00 |
9 | GAPDH | 0.39 | 0.42 | 0.93 | 0.64 | 0.63 | 78.85 | 80.08 | 1.26 | 0.75 | 20.00 | 15.00 |
10 | GKTP | 0.38 | 0.23 | 1.66 | 0.62 | 0.34 | 138.40 | 38.09 | 1.64 | 0.38 | 45.00 | 45.00 |
11 | KCR2 | 0.18 | 0.16 | 1.07 | 0.29 | 0.25 | 38.04 | 55.82 | 0.29 | 0.35 | 10.00 | 15.00 |
12 | FAD3 | 0.17 | 0.08 | 2.09 | 0.28 | 0.12 | 79.09 | 61.19 | 0.38 | 0.15 | 25.00 | 30.00 |
13 | ACCase | 0.16 | 0.08 | 2.05 | 0.26 | 0.12 | 70.26 | 13.27 | 0.38 | 0.10 | 30.00 | 35.00 |
14 | FAD2 | 0.16 | 0.14 | 1.09 | 0.26 | 0.22 | 65.42 | 80.85 | 0.35 | 0.42 | 25.00 | 25.00 |
15 | BcRK6 | 0.15 | 0.22 | 0.65 | 0.24 | 0.34 | 122.44 | 103.15 | 0.44 | 0.60 | 15.00 | 20.00 |
16 | KAS1 | 0.14 | 0.12 | 1.23 | 0.23 | 0.17 | 87.64 | 56.55 | 0.40 | 0.24 | 30.00 | 25.00 |
17 | BC | 0.10 | 0.09 | 1.13 | 0.17 | 0.14 | 46.83 | 47.12 | 0.17 | 0.14 | 10.00 | 10.00 |
18 | AGPase | 0.06 | 0.05 | 1.06 | 0.10 | 0.08 | 74.79 | 55.15 | 0.15 | 0.10 | 25.00 | 15.00 |
19 | KAS2 | 0.05 | 0.04 | 1.13 | 0.08 | 0.06 | 74.76 | 57.42 | 0.12 | 0.08 | 10.00 | 10.00 |
20 | FAD6 | 0.05 | 0.06 | 0.75 | 0.08 | 0.09 | 86.72 | 65.94 | 0.11 | 0.10 | 15.00 | 15.00 |
21 | PEPC | 0.04 | 0.03 | 1.39 | 0.06 | 0.04 | 61.29 | 62.14 | 0.07 | 0.05 | 10.00 | 15.00 |
22 | LPAAT | 0.04 | 0.03 | 1.22 | 0.06 | 0.04 | 54.31 | 55.81 | 0.06 | 0.05 | 25.00 | 15.00 |
23 | FatA | 0.03 | 0.05 | 0.68 | 0.05 | 0.07 | 65.09 | 71.64 | 0.07 | 0.10 | 15.00 | 10.00 |
24 | KACD | 0.03 | 0.03 | 1.24 | 0.05 | 0.04 | 64.80 | 50.96 | 0.06 | 0.04 | 10.00 | 10.00 |
25 | DGAT2 | 0.03 | 0.04 | 0.86 | 0.05 | 0.05 | 47.42 | 50.37 | 0.06 | 0.06 | 15.00 | 15.00 |
26 | SUC1 | 0.02 | 0.03 | 0.80 | 0.04 | 0.05 | 121.95 | 93.63 | 0.08 | 0.07 | 10.00 | 20.00 |
27 | α-CT | 0.02 | 0.03 | 0.78 | 0.04 | 0.04 | 50.17 | 57.06 | 0.04 | 0.05 | 20.00 | 20.00 |
28 | P 450 | 0.02 | 0.03 | 0.66 | 0.03 | 0.04 | 142.86 | 109.94 | 0.06 | 0.08 | 10.00 | 10.00 |
29 | FatB | 0.02 | 0.02 | 0.78 | 0.03 | 0.03 | 108.45 | 86.96 | 0.05 | 0.04 | 10.00 | 10.00 |
30 | KAS3 | 0.01 | 0.03 | 0.49 | 0.02 | 0.05 | 119.26 | 109.93 | 0.05 | 0.09 | 15.00 | 20.00 |
31 | MCAT | 0.01 | 0.01 | 1.22 | 0.02 | 0.01 | 106.77 | 107.48 | 0.03 | 0.02 | 20.00 | 25.00 |
32 | AAPT1 | 0.01 | 0.01 | 0.88 | 0.01 | 0.01 | 106.59 | 216.06 | 0.01 | 0.04 | 15.00 | 10.00 |