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Table 1 Selected SLM-2 bound RNA ligands

From: The STAR RNA binding proteins GLD-1, QKI, SAM68 and SLM-2 bind bipartite RNA motifs

Ligand

Sequence

n

Class I

SRE-1 (1)

UUUGGGCCCUUCUAAA GAAAUUUUCACUAUCCUAUUAA CAGUUCCGCCGCUC

1

SRE-2 (2)

CGUAGGCGCAUCGUUAAA AAUUCAAAGCAAAAAUUGUGUUUAA CUGGGGGA-

2

SRE-3 (2)

ACGCGCUUUUAA CGUGCCCUUACAUCCGCUAAA AACUAAA CUCUGACCAUUU

2

SRE-4 (28)

UUUGGGGGUUCAAUAAA AAUUUUCACUAUCCUAUUAA CAGUUCCGCCGCUCC

28

SRE-5 (1)

UUUGGGGGUUCUAUAAA AAUUUUCACUAUCCUAUUAA CAGUUCCGCCGCUCC

1

SRE-6 (2)

ACAGCACGUUUUAA CUUUUUGCUAAUUAUUCCUUAAA AUUCCUCCUCCUCUU

2

SRE-7 (2)

AUCGUGGUGGGCGGUUAA UUUGGAUUUCUUGAGCUUAUGGCUUUUAA UAUGG

2

SRE-8 (1)

GUGCGAUCUGUGUUUAA UCAUUGUUCUGUUUCGCUCUAAA UUUUUCGCCGCU

1

Class II

SRE-9 (2)

GCGGUUACGGGAUCCAUGUAGACGCACAUAUUAUAUGGGAUUAGGUAGACUG

2

SRE-10 (1)

GCUGGGGGUUGAUCCACUAUUUCCACAGCGGCAGCAACAGUUCCGCCACUUC

1

SRE-11 (1)

AUCGGGGGGGGCGGUUAA UUUGGACUACCCGAGCAUCAGGUCCUCCGCUGGG

1

  1. The UAAA and UUAA conserved motifs are shown in bold. n = number of times identified.