Skip to main content

Table 1 Primers used for the detection of specific ER genes

From: Innovative approach for transcriptomic analysis of obligate intracellular pathogen: selective capture of transcribed sequences of Ehrlichia ruminantium

Primer name

Primer sequence

Target gene or sequence

Product size (bp)

source (references)

ffh-F2 a

5' GGTAGGTCTTCAAGGTGTTGGTAAA 3'

Ffh

121

this work

ffh-R2

5' AGTTTGAGCTGCAGGACGATATAA 3'

   

recA-F1 a,b

5' TTGAAAAAGCGTTTGGTCGTG 3'

recA

121

this work

recA-R1

5' GGGAAACCACCAATACCCAAT 3'

   

rpoD-F1 a,b

5' CAGAGGGTTGCAATTTCTTGATT 3'

rpoD

121

this work

rpoD-R1

5' TCTGACCCACCATGTTGCAT 3'

   

16S-F1a b

5' AGCGCAACCCTCATCCTTAG 3'

rRNA 16S

121

this work

16S-R1

5' AGCCCACCCTATAAGGGCC 3'

   

map1gardF a,b

5' CACTTGAAGGAATGCCAGTTTCTC 3'

map1

85

this work

map1gardR

5' CTTAGGATTTGTAGCATTGATTACTGACACT 3'

   

AB128

5' ACTAGTAGAAATTGCACAATCTAT 3'

pCS20

278

Martinez et al., 2004

AB129

5' TGATAACTTGGTGCGGGAAATCCTT 3'

   

NKpn1-pdN9

5' GTGGTACCGCTCTCCGTCCGANNNNNNNNN 3'

Kpn I

/

Daigle et al., 2001

NKpn1

5' GTGGTACGGCTCTCCGTCCGA 3'

NKpn I tag

200-400

 

ARN16SGarF

5' AACTTGAGAGTTTGATCCTGGCT 3'

rRNA 16S

1503

this work

ARN16SGarR

5' AGGAGGTAATCCAGCCGCAGGTT 3'

  

this work

ARN5SGarR

5' TCTCCCGTGCCTTAAGACAAA 3'

rRNA 23S

2935

this work

ARN23SGarF

5' TTGATGGATGCCTTGGCGTTAA 3'

rRNA 5S

 

this work

  1. a: pair of primers use for RT-PCR
  2. b: pair of primers use for qRT-PCR